Hg_chrom4_TN10mRNA_8044
Organism: Heterodera glycines Gene Locus: chr4:6091521-6092855 Feature type: polypeptideProtein Sequence
Length: 330
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 1.339 | 0.771 | 0.522 | 1.364 | 1.943 | 0.433 | 0.909 | 0.269 | 1.024 | 0.826 | 1.604 | 1.347 | 1.457 | 1.484 | 1.342 | 0.795 | 0.735 | 0.932 | 0.713 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7561
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRTLKNRGYALNCRTRRM,RRTLKNRGYALNCRTRRMR
|
— | — |
66-87
|
0.985
|
— | — |
0.000
|
— | — |
0.827
|
0.269
|
0.007
|
0.352
|
0.067
|
0.039
|
0.047
|
0.003
|
0.065
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002097
|
2.000
|
2.000
|
Hsc_gene_11444.t1;Hsc_gene_11444.t2
|
Hsc_gene_11444.t1;Hsc_gene_11444.t2
|
— |
Q90596.1 Transcription factor MafK [Gallus gallus]
|
KAF7632964.1 bZIP_Maf domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003677|GO:0003700|GO:0006355
|
GO:0008150_0.880|GO:0005575_0.824|GO:0110165_0.824|GO:0009987_0.811|GO:0005622_0.792|GO:0065007_0.787|GO:0003674_0.773|GO:0005488_0.773|GO:0043226_0.759|GO:0043229_0.748|GO:0050789_0.744|GO:0050794_0.732|GO:0008152_0.664|GO:0043170_0.664|GO:0009058_0.661|GO:0009059_0.661|GO:0010467_0.661|GO:0044237_0.661|GO:0044249_0.661|GO:0016020_0.656|GO:0003676_0.644|GO:0097159_0.644|GO:0006139_0.642|GO:0016070_0.642|GO:0032774_0.642|GO:0034654_0.642|GO:0044238_0.642|GO:0090304_0.642|GO:0141187_0.642|GO:0019222_0.628|GO:0031323_0.625|GO:0080090_0.624|GO:0060255_0.622|GO:0006351_0.614|GO:0009889_0.609|GO:0031326_0.609|GO:0043227_0.603|GO:0010468_0.601|GO:0010556_0.601|GO:0003677_0.593|GO:0043565_0.588|GO:0019219_0.584|GO:0005634_0.580|GO:0043231_0.580|GO:0051252_0.579|GO:2001141_0.566|GO:0006355_0.562|GO:0003690_0.556|GO:1990837_0.556|GO:0048518_0.514|GO:0048522_0.501
|
IPR004826+127-204+|IPR008917+126-163+|IPR024874+106-241+
|
— |
PF03131+127-204+bZIP_Maf_transcription_factor
|
— |
PTHR10129+106-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;76-257;320-330
|
2.000
|
28-75;258-319
|
7x5g_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
37612.050
|
7.708
|
4.000
|
26.970
|
10.303
|
54.545
|
45.455
|
14.545
|
12.424
|
49.697
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
195.178
|
22.578
|
45.215
|
165.627
|
334.203
|
59.477
|
25.916
|
58.890
|
28.636
|
565.461
|
335.393
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
2.740
|
1.981
|
0.981
|
-2.476
|
-1.192
|
— |
-1.046
|
-4.453
|
— | — | — | — |
No JSON data available for plots.