Hg_chrom4_TN10mRNA_8047
Organism: Heterodera glycines Gene Locus: chr4:6101353-6104089 Feature type: polypeptideProtein Sequence
Length: 356
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 1.307 | 0.97 | 0.678 | 1.311 | 0.792 | 1.104 | 1.264 | 0.687 | 1.177 | 0.766 | 1.322 | 1.483 | 0.756 | 1.261 | 1.043 | 0.645 | 0.894 | 2.161 | 0.248 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7564
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
nucleus
|
RRLNAIVEGLSECEKRRCD
|
— | — | — | — |
1-26
|
0.893
|
0.956
|
0.000
|
0.000
|
0.466
|
0.374
|
0.054
|
0.422
|
0.290
|
0.133
|
0.079
|
0.067
|
0.157
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003860
|
1.000
|
2.000
|
Hsc_gene_11440.t1;Hsc_gene_11440.t2
|
Hsc_gene_11440.t1;Hsc_gene_11440.t2
|
— |
B4NWI1.1 Putative N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase GE19290 [Drosophila yakuba]
|
KAI6242352.1 N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase- like [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0003674_0.798|GO:0005575_0.725|GO:0110165_0.709|GO:0003824_0.694|GO:0016787_0.632|GO:0016810_0.559|GO:0016811_0.554|GO:0008150_0.539|GO:0005622_0.534|GO:0005737_0.520|GO:0016020_0.508
|
IPR000246+53-307_76-307+|IPR029055+75-316+
|
— |
PF01112+76-307+Asparaginase
|
— |
PTHR10188+53-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
353-356
|
1.000
|
1-352
|
1apz_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
39439.350
|
6.056
|
-2.500
|
26.966
|
11.517
|
46.910
|
53.090
|
13.764
|
13.202
|
52.247
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1534.557
|
2610.874
|
2059.945
|
1683.646
|
1508.884
|
1321.561
|
1149.322
|
1513.361
|
1422.895
|
1203.667
|
1297.621
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.573
|
-0.770
|
-0.181
|
-0.190
|
-0.176
|
-0.190
|
— |
-0.253
|
— | — | — | — | — |