Hg_chrom4_TN10mRNA_8049
Organism: Heterodera glycines Gene Locus: chr4:6104496-6106393 Feature type: polypeptideProtein Sequence
Length: 395
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.295 | 1.059 | 0.698 | 0.717 | 1.558 | 0.934 | 1.646 | 1.125 | 1.163 | 0.537 | 1.042 | 1.899 | 1.022 | 1.395 | 1.121 | 0.664 | 0.882 | 0.584 | 0.521 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7565
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_11439
|
— |
9-Migratory
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
RRRR
|
47-87
|
0.868
|
— | — |
1-27
|
— |
0.701
|
— |
0.000
|
0.158
|
0.282
|
0.066
|
0.372
|
0.317
|
0.205
|
0.059
|
0.193
|
0.244
|
0.736
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000573
|
2.000
|
5.000
|
Hsc_gene_11439.t1;Hsc_gene_11439.t2;Hsc_gene_11439.t3;Hsc_gene_11439.t4;Hsc_gene_11439.t5
|
Hsc_gene_11439.t1;Hsc_gene_11439.t2;Hsc_gene_11439.t3;Hsc_gene_11439.t4;Hsc_gene_11439.t5
|
— |
P91268.2 Probable peptidyl-alpha-hydroxyglycine alpha-amidating lyase pgal-1 [Caenorhabditis elegans]
|
KAI1721589.1 NHL repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0005515|GO:0006518|GO:0016020
|
GO:0005575_0.878|GO:0110165_0.877|GO:0003674_0.727|GO:0008150_0.681|GO:0016020_0.621|GO:0003824_0.610|GO:0005622_0.546|GO:0140096_0.539|GO:0016829_0.515|GO:0004598_0.509|GO:0016840_0.509|GO:0016842_0.509
|
IPR000720+105-123_168-187_208-231+|IPR001258+153-189_159-185_196-240_209-237_259-292_264-289+|IPR011042+77-372+
|
— |
PF01436+159-185_209-237_264-289+NHL_repeat
|
— |
PTHR10680+57-312+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-395
|
5wm0_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
44092.820
|
7.707
|
7.500
|
23.797
|
12.658
|
47.342
|
52.658
|
13.671
|
10.127
|
51.139
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
5996.652
|
2408.316
|
17502.964
|
9858.728
|
1786.460
|
848.610
|
371.976
|
16271.453
|
4110.938
|
4758.959
|
4481.235
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.633
|
1.896
|
-0.721
|
-2.496
|
-1.060
|
-1.179
|
4.161
|
-5.309
|
— | — | — | — | — |