Hg_chrom4_TN10mRNA_8050
Organism: Heterodera glycines Gene Locus: chr4:6110634-6112450 Feature type: polypeptideProtein Sequence
Length: 542
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.987 | 1.03 | 0.47 | 0.509 | 1.015 | 0.757 | 0.944 | 0.738 | 1.353 | 1.621 | 0.447 | 1.628 | 2.409 | 0.532 | 1.205 | 1.133 | 0.756 | 1.174 | 1.845 | 0.217 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7566
|
— | — |
0.667
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — |
20-51
|
0.996
|
2-23
|
0.958
|
— | — |
0.000
|
— | — |
0.125
|
0.234
|
0.062
|
0.187
|
0.317
|
0.656
|
0.409
|
0.023
|
0.536
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008696
|
1.000
|
1.000
|
Hsc_gene_11438.t1
|
Hsc_gene_11438.t1
|
— |
O34718.1 Major myo-inositol transporter IolT [Bacillus subtilis subsp. subtilis str. 168]
|
KAF7632959.1 MFS domain-containing protein [Meloidogyne graminicola]
|
WP_260652836
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0005575_0.885|GO:0110165_0.885|GO:0016020_0.853|GO:0008150_0.830|GO:0009987_0.720|GO:0005886_0.713|GO:0071944_0.713|GO:0006810_0.708|GO:0051179_0.708|GO:0051234_0.708|GO:0055085_0.676|GO:0003674_0.664|GO:0005215_0.606|GO:0022857_0.606|GO:0005622_0.503|GO:0043226_0.503
|
IPR003663+23-478_48-58_131-150_295-305_384-405_407-419+|IPR005828+42-483+|IPR005829+136-161+|IPR020846+40-472+|IPR036259+29-482_30-487+|IPR047984+40-470+|IPR050814+28-496+
|
— |
PF00083+42-483+Sugar_(and_other)_transporter
|
— |
PTHR48020+28-496+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
504-542
|
1.000
|
1-503
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
60313.130
|
7.634
|
5.000
|
19.004
|
13.284
|
38.930
|
61.070
|
10.332
|
8.672
|
47.970
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
steelblue
|
617.627
|
342.915
|
561.443
|
378.418
|
361.710
|
542.447
|
2096.253
|
787.684
|
167.139
|
675.186
|
457.452
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.484
|
— |
-0.462
|
— |
0.599
|
1.960
|
0.434
|
1.553
|
— | — | — | — | — |
No JSON data available for plots.