Hg_chrom4_TN10mRNA_8053
Organism: Heterodera glycines Gene Locus: chr4:6124762-6126319 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 0.667 | 0.869 | 0.659 | 0.955 | 0.653 | 1.024 | 1.911 | 1.132 | 1.506 | 0.917 | 0.937 | 1.415 | 1.225 | 1.495 | 0.955 | 0.574 | 1.303 | 0.735 | 0.094 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7568
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.316
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
chloroplast_transit_peptide
|
plastid
|
— | — |
4-24
|
0.986
|
14-74
|
1.000
|
— | — |
0.000
|
— | — |
0.140
|
0.270
|
0.976
|
0.174
|
0.020
|
0.077
|
0.058
|
0.024
|
0.070
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008697
|
1.000
|
1.000
|
Hsc_gene_11435.t1
|
Hsc_gene_11435.t1;Hsc_gene_11435.t2
|
— |
Q9S586.1 Phosphoglycolate phosphatase 1 [Pseudomonas aeruginosa PAO1]
|
KAH7732008.1 haloacid dehalogenase-like hydrolase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.870|GO:0008150_0.718|GO:0005575_0.713|GO:0110165_0.707|GO:0005622_0.654|GO:0005737_0.602|GO:0008152_0.596|GO:0005488_0.573|GO:0044238_0.568|GO:0003824_0.552
|
IPR023214+179-314+|IPR036412+74-313+|IPR050155+72-311+
|
— |
PF00702+79-278+haloacid_dehalogenase-like_hydrolase
|
— |
PTHR43434+72-311+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-314
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
34580.130
|
9.838
|
15.000
|
27.707
|
10.191
|
43.312
|
56.688
|
17.197
|
10.510
|
50.318
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1961.264
|
2002.451
|
1101.377
|
1308.418
|
2729.062
|
1123.050
|
1422.131
|
2663.580
|
733.877
|
3398.846
|
2256.716
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.091
|
-0.751
|
0.357
|
1.029
|
-1.267
|
0.351
|
1.154
|
-0.768
|
-2.323
|
— | — | — | — |
No JSON data available for plots.