SCN Proteipedia

Hg_chrom4_TN10mRNA_8054

Organism: Heterodera glycines Gene Locus: chr4:6132094-6136536 Feature type: polypeptide

Protein Sequence

Length: 536

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.02	0.911	0.712	1.094	0.902	1.435	1.044	1.399	0.829	1.336	0.707	1.646	1.503	0.682	1.218	1.279	0.765	0.791	0.144	0.768	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7569	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRTVSLKLQYSCKRKDH	42-64	0.998	—	—	—	—	0.000	—	—	0.814	0.083	0.029	0.396	0.035	0.032	0.027	0.015	0.068	0.058

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003862	2.000	1.000	Hsc_gene_11434.t1	Hsc_gene_11434.t1;Hsc_gene_11434.t2;Hsc_gene_11434.t3;Hsc_gene_11434.t4	—	G5ED47.1 High zinc activated nuclear receptor protein [Caenorhabditis elegans]	KAI3411145.1 Ligand-binding domain of nuclear hormone receptor [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.863\|GO:0003674_0.827\|GO:0009987_0.803\|GO:0005488_0.800\|GO:0005575_0.775\|GO:0065007_0.770\|GO:0050789_0.758\|GO:0050794_0.755\|GO:0110165_0.750\|GO:0097159_0.731\|GO:0005622_0.701\|GO:0008152_0.692\|GO:0009058_0.692\|GO:0043170_0.690\|GO:0044237_0.686\|GO:0009059_0.683\|GO:0019222_0.683\|GO:0031323_0.683\|GO:0044249_0.683\|GO:0044238_0.681\|GO:0043226_0.680\|GO:0060255_0.680\|GO:0080090_0.680\|GO:0010467_0.672\|GO:0043229_0.672\|GO:0003676_0.671\|GO:0009889_0.671\|GO:0010556_0.671\|GO:0031326_0.671\|GO:0006139_0.661\|GO:0034654_0.661\|GO:0090304_0.649\|GO:0016070_0.648\|GO:0141187_0.648\|GO:0032774_0.647\|GO:0010468_0.646\|GO:0019219_0.640\|GO:0051252_0.631\|GO:0006351_0.630\|GO:2001141_0.625\|GO:0003677_0.623\|GO:0006355_0.623\|GO:0043565_0.623\|GO:0006357_0.571\|GO:0006366_0.571\|GO:0003690_0.564\|GO:1990837_0.564\|GO:0016020_0.556\|GO:0000976_0.548\|GO:0001067_0.548\|GO:0050896_0.511	IPR000536+281-533_320-504_323-517+\|IPR001628+25-96_25-100_27-93_28-44_28-54_44-59_77-85_85-93+\|IPR013088+18-121+\|IPR035500+287-522_295-524+	SM00399+25-96+\|SM00430+320-504+	PF00104+323-517+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+27-93+Zinc_finger,_C4_type_(two_domains)	—	PTHR46011+26-521+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-13;104-147	2.000	14-103;148-536	3e00_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.846	58749.930	8.253	14.500	22.761	11.007	45.896	54.104	13.433	9.328	50.933

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	1308.438	2605.765	2562.994	1476.724	847.292	1323.783	1514.249	1850.589	733.926	605.946	660.795

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.254	-0.957	-0.687	-0.833	0.658	0.205	0.383	—	—	—	—	—	—

No JSON data available for plots.

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