Hg_chrom4_TN10mRNA_8055
Organism: Heterodera glycines Gene Locus: chr4:6132094-6136601 Feature type: polypeptideProtein Sequence
Length: 535
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 0.913 | 0.714 | 1.096 | 0.903 | 1.39 | 1.046 | 1.402 | 0.831 | 1.339 | 0.708 | 1.649 | 1.506 | 0.683 | 1.221 | 1.282 | 0.766 | 0.793 | 0.144 | 0.77 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7569
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRTVSLKLQYSCKRKDH
|
42-64
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.816
|
0.083
|
0.029
|
0.395
|
0.035
|
0.032
|
0.027
|
0.015
|
0.068
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003862
|
2.000
|
1.000
|
Hsc_gene_11434.t1
|
Hsc_gene_11434.t1;Hsc_gene_11434.t2;Hsc_gene_11434.t3;Hsc_gene_11434.t4
|
— |
G5ED47.1 High zinc activated nuclear receptor protein [Caenorhabditis elegans]
|
KAI3411145.1 Ligand-binding domain of nuclear hormone receptor [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.863|GO:0003674_0.828|GO:0009987_0.802|GO:0005488_0.799|GO:0005575_0.774|GO:0065007_0.767|GO:0050789_0.757|GO:0050794_0.752|GO:0110165_0.749|GO:0097159_0.727|GO:0005622_0.702|GO:0008152_0.691|GO:0009058_0.691|GO:0043170_0.689|GO:0044237_0.684|GO:0043226_0.683|GO:0044238_0.681|GO:0009059_0.680|GO:0044249_0.680|GO:0019222_0.679|GO:0031323_0.679|GO:0080090_0.679|GO:0060255_0.678|GO:0010467_0.671|GO:0043229_0.671|GO:0003676_0.668|GO:0009889_0.668|GO:0010556_0.668|GO:0031326_0.668|GO:0006139_0.660|GO:0034654_0.660|GO:0090304_0.646|GO:0141187_0.646|GO:0010468_0.645|GO:0016070_0.645|GO:0032774_0.645|GO:0019219_0.637|GO:0051252_0.627|GO:0006351_0.626|GO:2001141_0.621|GO:0006355_0.619|GO:0003677_0.618|GO:0043565_0.618|GO:0006357_0.566|GO:0006366_0.566|GO:0003690_0.561|GO:1990837_0.561|GO:0016020_0.556|GO:0000976_0.544|GO:0001067_0.544|GO:0050896_0.513
|
IPR000536+280-532_319-503_322-516+|IPR001628+25-96_25-100_27-93_28-44_28-54_44-59_77-85_85-93+|IPR013088+18-121+|IPR035500+286-521_294-523+
|
SM00399+25-96+|SM00430+319-503+
|
PF00104+322-516+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+27-93+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR46011+26-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;104-147
|
2.000
|
14-103;148-535
|
3e00_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
58621.800
|
8.253
|
14.500
|
22.804
|
11.028
|
45.794
|
54.206
|
13.458
|
9.346
|
51.028
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1308.438
|
2605.765
|
2562.994
|
1476.724
|
847.292
|
1323.783
|
1514.249
|
1850.589
|
733.926
|
605.946
|
660.795
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.254
|
-0.957
|
-0.687
|
-0.833
|
0.658
|
0.205
|
0.383
|
— | — | — | — | — | — |
No JSON data available for plots.