Hg_chrom4_TN10mRNA_8057
Organism: Heterodera glycines Gene Locus: chr4:6139932-6143657 Feature type: polypeptideProtein Sequence
Length: 671
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.074 | 1.074 | 1.057 | 0.463 | 1.217 | 1.643 | 0.515 | 1.341 | 1.027 | 1.349 | 0.723 | 1.49 | 1.49 | 0.659 | 1.095 | 1.426 | 0.709 | 0.723 | 0.688 | 0.657 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7571
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.589
|
0.147
|
0.025
|
0.600
|
0.169
|
0.184
|
0.164
|
0.042
|
0.052
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008698
|
1.000
|
1.000
|
Hsc_gene_11432.t1
|
Hsc_gene_11432.t1
|
— |
Q18217.2 NEDD8-activating enzyme E1 regulatory subunit [Caenorhabditis elegans]
|
KAF7632958.1 NEDD8-activating enzyme E1 regulatory subunit [Meloidogyne graminicola]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008641
|
GO:0008150_0.832|GO:0005575_0.811|GO:0110165_0.749|GO:0005622_0.650|GO:0009987_0.510|GO:0016020_0.508
|
IPR000594+29-663+|IPR035985+23-388_485-655+|IPR045886+17-648+
|
— |
PF00899+29-663+ThiF_family
|
— |
PTHR10953+17-648+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
414-482;659-671
|
2.000
|
1-413;483-658
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
75417.860
|
5.420
|
-11.000
|
25.931
|
11.177
|
51.267
|
48.733
|
12.817
|
13.115
|
47.839
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
2366.291
|
1971.310
|
1269.814
|
1471.602
|
1605.580
|
1604.571
|
1896.101
|
1598.609
|
872.236
|
5416.748
|
3469.100
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.864
|
-0.559
|
0.322
|
— | — |
0.251
|
— |
0.389
|
-2.743
|
— | — | — | — |
No JSON data available for plots.