Hg_chrom4_TN10mRNA_8058
Organism: Heterodera glycines Gene Locus: chr4:6143745-6144284 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.506 | 1.011 | 1.242 | 1.071 | 1.656 | 0.319 | 0.518 | 0.932 | 1.242 | 1.511 | 1.129 | 1.827 | 1.035 | 1.194 | 0.887 | 0.71 | 1.12 | 0.941 | 0.0 | 1.279 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7572
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.900
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.051
|
0.966
|
0.006
|
0.157
|
0.067
|
0.023
|
0.109
|
0.035
|
0.050
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008699
|
1.000
|
1.000
|
Hsc_gene_11431.t1
|
Hsc_gene_11431.t1
|
— |
P37193.3 Adrenodoxin-like protein 1, mitochondrial [Drosophila melanogaster]
|
KAF7632957.1 2Fe-2S ferredoxin-type domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0051536|GO:0051537|GO:0140647
|
GO:0008150_0.801|GO:0005575_0.741|GO:0110165_0.738|GO:0009987_0.692|GO:0005622_0.668|GO:0005737_0.645|GO:0016020_0.604|GO:0043226_0.580|GO:0043229_0.555|GO:0043227_0.540|GO:0043231_0.531|GO:0008152_0.517
|
IPR001041+59-132+|IPR001055+27-161_83-93_102-116_125-133+|IPR012675+45-155+|IPR036010+52-147+
|
— |
PF00111+59-132+2Fe-2S_iron-sulfur_cluster_binding_domain
|
— |
PTHR23426+27-161+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
8rmg_I
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
18368.090
|
4.672
|
-6.500
|
30.435
|
9.938
|
47.826
|
52.174
|
13.665
|
16.770
|
47.205
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
492.509
|
348.735
|
299.873
|
339.127
|
378.638
|
293.874
|
281.449
|
296.776
|
582.666
|
878.300
|
751.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.448
|
-0.178
|
0.287
|
— |
-0.350
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.