Hg_chrom4_TN10mRNA_8061
Organism: Heterodera glycines Gene Locus: chr4:6150043-6150776 Feature type: polypeptideProtein Sequence
Length: 194
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 0.839 | 0.937 | 0.355 | 0.945 | 1.057 | 0.43 | 1.546 | 0.916 | 1.463 | 1.015 | 0.606 | 1.289 | 1.685 | 1.368 | 0.884 | 0.423 | 1.406 | 0.793 | 1.516 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7575
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.091
|
0.961
|
0.013
|
0.163
|
0.025
|
0.024
|
0.058
|
0.051
|
0.021
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008701
|
1.000
|
1.000
|
Hsc_gene_11427.t1
|
Hsc_gene_11427.t1;Hsc_gene_11429.t1;Hsc_gene_11429.t2
|
— | — |
KHN83032.1 39S ribosomal protein L48, mitochondrial [Toxocara canis]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005761
|
GO:0005575_0.894|GO:0110165_0.888|GO:0005622_0.824|GO:0016020_0.812|GO:0005737_0.804|GO:0043226_0.764|GO:0043229_0.760|GO:0043227_0.735|GO:0043231_0.731|GO:0005739_0.575
|
IPR027486+59-154_60-153+|IPR027487+55-178+|IPR036838+58-152+
|
SM01403+59-154+
|
PF00338+60-153+Ribosomal_protein_S10p/S20e
|
— |
PTHR13473+55-178+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-194
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
22320.770
|
9.415
|
8.000
|
27.320
|
13.918
|
43.814
|
56.186
|
16.495
|
10.825
|
46.907
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
796.640
|
839.404
|
915.726
|
891.098
|
971.647
|
905.048
|
755.979
|
1062.153
|
258.008
|
913.898
|
632.802
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-0.249
|
— |
-0.347
|
— | — | — | — | — |
No JSON data available for plots.