Hg_chrom4_TN10mRNA_8062
Organism: Heterodera glycines Gene Locus: chr4:6151016-6153810 Feature type: polypeptideProtein Sequence
Length: 556
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.088 | 0.753 | 0.948 | 0.992 | 0.719 | 0.507 | 0.856 | 2.068 | 1.279 | 1.264 | 0.763 | 1.164 | 1.649 | 0.899 | 1.101 | 0.976 | 0.914 | 1.145 | 0.692 | 0.793 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7576
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.066
|
0.427
|
0.128
|
0.246
|
0.797
|
0.133
|
0.160
|
0.660
|
0.210
|
0.155
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008702
|
1.000
|
1.000
|
Hsc_gene_11426.t1
|
Hsc_gene_11426.t1
|
— |
Q9Y194.1 Sphingosine-1-phosphate lyase [Caenorhabditis elegans]
|
KAI1730904.1 pyridoxal-dependent decarboxylase conserved domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016830|GO:0019752|GO:0030170
|
GO:0008150_0.848|GO:0009987_0.741|GO:0005575_0.684|GO:0110165_0.684|GO:0003674_0.661|GO:0008152_0.596|GO:0044238_0.566|GO:0003824_0.559|GO:0005622_0.547|GO:0016020_0.545|GO:0005737_0.524
|
IPR002129+146-449+|IPR015421+145-407+|IPR015422+112-508+|IPR015424+110-506+|IPR050477+57-549+
|
— |
PF00282+146-449+Pyridoxal-dependent_decarboxylase_conserved_domain
|
G3DSA:3.40.640.10:FF:000020+145-407+sphingosine-1-phosphate_lyase_1|G3DSA:6.10.140.2150:FF:000001+508-546+Sphingosine-1-phosphate_lyase_1
|
PTHR42735+57-549+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-556
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.741
|
61290.680
|
8.101
|
16.500
|
24.101
|
13.669
|
41.727
|
58.273
|
14.568
|
9.532
|
52.518
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
924.649
|
1107.438
|
1115.719
|
1389.901
|
1434.062
|
1314.904
|
1328.050
|
1144.870
|
480.365
|
371.961
|
418.420
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.218
|
0.191
|
0.425
|
— | — | — |
-0.306
|
0.357
|
— | — | — | — | — |
No JSON data available for plots.