Hg_chrom4_TN10mRNA_8066
Organism: Heterodera glycines Gene Locus: chr4:6164312-6166384 Feature type: polypeptideProtein Sequence
Length: 476
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.708 | 0.977 | 1.07 | 0.652 | 0.91 | 0.593 | 0.575 | 1.891 | 1.307 | 0.88 | 0.764 | 1.359 | 1.342 | 1.333 | 1.415 | 1.14 | 1.205 | 1.019 | 0.646 | 1.236 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7580
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.750
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
plastid
|
— | — | — | — |
60-81
|
1.000
|
— | — |
0.000
|
— | — |
0.332
|
0.324
|
0.701
|
0.468
|
0.100
|
0.053
|
0.073
|
0.030
|
0.103
|
0.187
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008706
|
1.000
|
1.000
|
Hsc_gene_11422.t1
|
Hsc_gene_11422.t1;Hsc_gene_11422.t2
|
— |
Q9LPG6.1 Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 [Arabidopsis thaliana]
|
KAI1707528.1 GDP-mannose 4,6 dehydratase domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008460|GO:0009225
|
GO:0003674_0.798|GO:0008150_0.703|GO:0005575_0.686|GO:0110165_0.675|GO:0003824_0.654|GO:0009987_0.563|GO:0005622_0.537|GO:0008152_0.530|GO:0044238_0.508|GO:0016020_0.507
|
IPR005888+139-459+|IPR016040+142-452+|IPR036291+139-463+
|
— |
PF16363+142-452+GDP-mannose_4,6_dehydratase
|
G3DSA:3.40.50.720:FF:000304+141-338+UDP-glucose_4,6-dehydratase
|
PTHR43000+136-464+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60;473-476
|
1.000
|
61-472
|
2hun_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
54027.350
|
8.073
|
12.000
|
27.101
|
13.655
|
48.950
|
51.050
|
15.756
|
11.345
|
51.891
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
1208.706
|
533.424
|
922.651
|
599.394
|
2172.082
|
5328.244
|
1250.281
|
2259.766
|
44.212
|
355.239
|
221.942
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
— |
-0.516
|
1.825
|
1.310
|
-2.081
|
-1.348
|
-0.709
|
— |
3.952
|
— | — | — |
No JSON data available for plots.