SCN Proteipedia

Hg_chrom4_TN10mRNA_8068

Organism: Heterodera glycines Gene Locus: chr4:6175420-6182365 Feature type: polypeptide

Protein Sequence

Length: 1,218

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.735	1.088	1.12	1.217	1.341	1.116	0.518	1.108	1.277	1.087	1.12	1.207	1.368	0.9	1.19	1.161	0.686	0.883	0.758	0.749	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7582	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.817

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKL,RPRR,RKRISEKMVDHCVALPRRR,KRISEKMVDHCVALPRRRI	—	—	—	—	—	—	0.000	—	—	0.807	0.158	0.046	0.336	0.121	0.046	0.060	0.017	0.128	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008707	1.000	1.000	Hsc_gene_11421.t1	Hsc_gene_11421.t1	—	P34544.5 Histone-lysine N-methyltransferase met-2 [Caenorhabditis elegans]	KAI1707530.1 SET domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0005515\|GO:0005634\|GO:0008270\|GO:0042054	GO:0008150_0.918\|GO:0003674_0.863\|GO:0009987_0.862\|GO:0005575_0.820\|GO:0110165_0.815\|GO:0005622_0.744\|GO:0071840_0.739\|GO:0016043_0.730\|GO:0065007_0.709\|GO:0050789_0.691\|GO:0008152_0.669\|GO:0003824_0.668\|GO:0050794_0.666\|GO:0043170_0.656\|GO:0006325_0.639\|GO:0006338_0.639\|GO:0016020_0.631\|GO:0043226_0.629\|GO:0016740_0.618\|GO:0044237_0.607\|GO:0043229_0.604\|GO:0140096_0.603\|GO:0009058_0.598\|GO:0044249_0.585\|GO:0008168_0.583\|GO:0016741_0.583\|GO:0009059_0.579\|GO:0019222_0.579\|GO:0010467_0.569\|GO:0031323_0.569\|GO:0060255_0.567\|GO:0005488_0.564\|GO:0140993_0.562\|GO:0043227_0.560\|GO:0008276_0.558\|GO:0042054_0.558\|GO:0009889_0.552\|GO:0010556_0.552\|GO:0031326_0.552\|GO:0048519_0.548\|GO:0010468_0.547\|GO:0140938_0.535\|GO:0048523_0.534\|GO:0043231_0.531\|GO:0008170_0.520\|GO:0008757_0.520\|GO:0016278_0.520\|GO:0016279_0.520	IPR001214+949-1194_949-1200_960-1193+\|IPR001739+721-800_724-807_730-801+\|IPR003616+1202-1218+\|IPR007728+815-932_820-941_870-946+\|IPR016177+726-800+\|IPR041291+395-448+\|IPR046341+808-1043_824-1215_1073-1218+\|IPR051516+360-1218+	SM00317+949-1200+\|SM00391+724-807+\|SM00468+815-932+	PF00856+960-1193+SET_domain\|PF01429+730-801+Methyl-CpG_binding_domain\|PF05033+820-941+Pre-SET_motif\|PF18359+395-448+Histone_methyltransferase_Tudor_domain_1	—	PTHR46024+360-1218+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1017-1060	2.000	1-1016;1061-1218	6a5n_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.617	138622.770	6.586	1.500	29.639	10.673	50.985	49.015	15.435	14.204	47.865

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkturquoise	2025.024	2359.704	2392.594	2198.631	1863.405	1591.410	1964.240	1560.951	2603.778	1682.546	2077.360

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.209	-0.239	—	-0.270	-0.214	0.315	—	0.475	—	—	—	—	—

No JSON data available for plots.

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