Hg_chrom4_TN10mRNA_8069
Organism: Heterodera glycines Gene Locus: chr4:6184790-6187628 Feature type: polypeptideProtein Sequence
Length: 575
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.355 | 1.011 | 0.316 | 0.96 | 0.58 | 2.23 | 0.807 | 1.13 | 0.812 | 0.776 | 0.395 | 1.33 | 1.208 | 1.572 | 1.136 | 1.938 | 0.969 | 0.738 | 0.268 | 0.358 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7583
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRSISDQKRYICKRSQR,KRCLEIGMLPENVQNKRNK
|
— | — |
75-103
|
0.999
|
— | — |
0.000
|
— | — |
0.833
|
0.122
|
0.016
|
0.384
|
0.042
|
0.025
|
0.023
|
0.042
|
0.070
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003865
|
1.000
|
2.000
|
Hsc_gene_11420.t1;Hsc_gene_11420.t2
|
Hsc_gene_11420.t1
|
— |
P41933.1 Nuclear hormone receptor family member odr-7 [Caenorhabditis elegans]
|
KAF7632297.1 Nuclear receptor domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003677|GO:0003700|GO:0004879|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.931|GO:0005575_0.797|GO:0110165_0.789|GO:0065007_0.772|GO:0050789_0.770|GO:0009987_0.765|GO:0050794_0.765|GO:0005622_0.716|GO:0032501_0.632|GO:0032502_0.630|GO:0048856_0.630|GO:0003674_0.627|GO:0005488_0.626|GO:0043226_0.622|GO:0043229_0.609|GO:0050896_0.597|GO:0008152_0.586|GO:0009058_0.586|GO:0009059_0.586|GO:0010467_0.586|GO:0043170_0.586|GO:0044237_0.586|GO:0044249_0.586|GO:0007275_0.579|GO:0003676_0.578|GO:0097159_0.578|GO:0019222_0.574|GO:0031323_0.574|GO:0016020_0.570|GO:0006139_0.568|GO:0016070_0.568|GO:0044238_0.568|GO:0090304_0.568|GO:0080090_0.567|GO:0032774_0.564|GO:0034654_0.564|GO:0141187_0.564|GO:0060255_0.563|GO:0006351_0.551|GO:0009889_0.551|GO:0010468_0.551|GO:0010556_0.551|GO:0031326_0.551|GO:0048518_0.539|GO:0048522_0.538|GO:0019219_0.534|GO:0051252_0.533|GO:2001141_0.522|GO:0006355_0.521|GO:0003677_0.517|GO:0048731_0.513
|
IPR001628+385-461_385-465_387-458_388-415+|IPR013088+378-498+|IPR016355+310-496+
|
SM00399+385-461+
|
PF00105+387-458+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR24086+310-496+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;469-575
|
1.000
|
3-468
|
1dsz_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
60931.370
|
9.407
|
23.500
|
15.652
|
8.174
|
48.174
|
51.826
|
10.435
|
5.217
|
59.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
183.222
|
594.846
|
269.247
|
151.199
|
77.088
|
54.069
|
144.764
|
104.413
|
256.047
|
86.204
|
158.994
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.374
|
-2.113
|
-0.723
|
-1.002
|
-0.499
|
1.433
|
0.848
|
0.614
|
— | — | — | — | — |
No JSON data available for plots.