Hg_chrom4_TN10mRNA_8070
Organism: Heterodera glycines Gene Locus: chr4:6187776-6189963 Feature type: polypeptideProtein Sequence
Length: 163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.07 | 1.427 | 0.892 | 0.635 | 0.716 | 1.888 | 0.803 | 1.534 | 1.909 | 1.161 | 1.301 | 1.444 | 0.852 | 0.708 | 0.626 | 0.964 | 0.603 | 0.744 | 0.472 | 0.722 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7584
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.065
|
0.967
|
0.011
|
0.147
|
0.045
|
0.038
|
0.071
|
0.074
|
0.054
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008708
|
1.000
|
1.000
|
Hsc_gene_11419.t1
|
Hsc_gene_11419.t1
|
— |
Q9D7P6.1 Iron-sulfur cluster assembly enzyme ISCU [Mus musculus]
|
KAH7696072.1 Protein Y45F10D.4 [Aphelenchus avenae];KAH7717082.1 Protein Y45F10D.4 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005506|GO:0016226|GO:0051536
|
GO:0005575_0.907|GO:0110165_0.900|GO:0005622_0.849|GO:0005737_0.799|GO:0008150_0.760|GO:0016020_0.748|GO:0043226_0.735|GO:0043229_0.728|GO:0009987_0.712|GO:0043227_0.691|GO:0043231_0.669|GO:0071840_0.581|GO:0016043_0.573|GO:0003674_0.546|GO:0044085_0.542|GO:0022607_0.534|GO:0005739_0.521|GO:0016226_0.517|GO:0031163_0.517
|
IPR002871+31-159_33-157_34-148+|IPR011339+34-157+
|
— |
PF01592+33-157+NifU-like_N_terminal_domain
|
G3DSA:3.90.1010.10:FF:000001+32-159+Iron-sulfur_cluster_assembly_scaffold_protein_IscU
|
PTHR10093+31-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
153-163
|
1.000
|
1-152
|
8tvt_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
17993.670
|
9.100
|
6.500
|
23.926
|
9.202
|
47.853
|
52.147
|
14.724
|
9.202
|
47.853
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1627.767
|
1368.000
|
1276.878
|
1529.746
|
1777.647
|
1457.373
|
975.010
|
1710.435
|
1434.283
|
2260.108
|
1906.183
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.328
|
— |
0.369
|
0.185
|
-0.272
|
-0.569
|
— |
-0.668
|
— | — | — | — | — |
No JSON data available for plots.