SCN Proteipedia

Hg_chrom4_TN10mRNA_8071

Organism: Heterodera glycines Gene Locus: chr4:6189987-6192169 Feature type: polypeptide

Protein Sequence

Length: 486

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.885	1.101	1.085	0.639	1.2	1.372	0.931	1.132	0.96	0.973	0.655	2.542	1.257	0.752	0.966	0.941	0.944	1.091	0.633	1.029	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7585	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRISEQFTAMFRRKAF	—	—	—	—	—	—	0.000	—	—	0.380	0.226	0.108	0.616	0.136	0.132	0.135	0.071	0.163	0.147

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000302	5.000	4.000	Hsc_gene_18906.t1;Hsc_gene_24340.t1;Hsc_gene_558.t1;Hsc_gene_5981.t1	Hsc_gene_11418.t1;Hsc_gene_18906.t1;Hsc_gene_24340.t1;Hsc_gene_558.t1	B0272.1;C36E8.5;C54C6.2;K01G5.7	P18241.1 Tubulin beta-1 chain [Brugia pahangi]	KAF7640230.1 Tubulin beta chain [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017	GO:0005575_0.783\|GO:0110165_0.779\|GO:0008150_0.752\|GO:0005622_0.631\|GO:0009987_0.611\|GO:0016020_0.588\|GO:0043226_0.542\|GO:0003674_0.507\|GO:0043229_0.501	IPR000217+41-466_50-70_91-110_133-144_146-170_172-190_191-212_216-229_230-250_410-438+\|IPR002453+81-98_128-139_148-166_192-204_252-264_270-279_285-298_305-321_351-369_369-383_387-410_417-428_452-470+\|IPR003008+43-251_87-284+\|IPR008280+284-469+\|IPR017975+180-186+\|IPR018316+286-423_301-422+\|IPR023123+414-484+\|IPR036525+41-283_41-303+\|IPR037103+304-413+	SM00864+87-284+\|SM00865+286-423+	PF00091+43-251+Tubulin/FtsZ_family,_GTPase_domain\|PF03953+301-422+Tubulin_C-terminal_domain	G3DSA:1.10.287.600:FF:000006+414-485+Tubulin_beta_chain\|G3DSA:3.30.1330.20:FF:000002+304-413+Tubulin_beta_chain\|G3DSA:3.40.50.1440:FF:000003+41-303+Tubulin_beta_chain	PTHR11588+41-466+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-13;453-486	1.000	14-452	6e88_O	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.562	54130.070	4.795	-14.500	24.486	11.111	46.914	53.086	11.317	13.169	51.440

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	yellow	4801.108	2776.007	3580.802	5721.567	7059.939	5306.176	6368.674	4153.663	4960.215	4172.126	4509.878

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.138	0.906	0.784	0.271	-0.396	0.274	-0.461	0.761	—	—	—	—	—

No JSON data available for plots.

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