Hg_chrom4_TN10mRNA_8075
Organism: Heterodera glycines Gene Locus: chr4:6211001-6214876 Feature type: polypeptideProtein Sequence
Length: 583
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.798 | 0.437 | 0.946 | 0.658 | 0.484 | 0.653 | 1.201 | 0.839 | 1.785 | 0.598 | 1.211 | 1.239 | 1.253 | 1.365 | 1.519 | 0.872 | 1.169 | 1.187 | 0.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7589
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — |
30-66
|
0.999
|
— | — |
0.000
|
— | — |
0.122
|
0.105
|
0.009
|
0.188
|
0.259
|
0.164
|
0.151
|
0.009
|
0.760
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008711
|
1.000
|
1.000
|
Hsc_gene_24298.t1
|
Hsc_gene_24298.t1
|
— |
P30938.2 Somatostatin receptor type 5 [Rattus norvegicus]
|
KAI1730921.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.938|GO:0009987_0.911|GO:0065007_0.876|GO:0050789_0.857|GO:0050794_0.836|GO:0005575_0.829|GO:0110165_0.829|GO:0003674_0.815|GO:0023052_0.812|GO:0007154_0.810|GO:0050896_0.801|GO:0051716_0.779|GO:0007165_0.747|GO:0016020_0.696|GO:0007186_0.690|GO:0071944_0.680|GO:0005488_0.678|GO:0005886_0.677|GO:0060089_0.656|GO:0038023_0.647|GO:0004888_0.631|GO:0004930_0.554
|
IPR000276+66-90_82-348_99-120_144-166_150-166_180-201_240-263_289-313_330-356+|IPR017452+81-348+
|
— |
PF00001+82-348+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24229+60-374+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;484-583
|
1.000
|
10-483
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
64067.700
|
9.885
|
32.000
|
19.383
|
11.149
|
40.652
|
59.348
|
13.036
|
6.346
|
53.345
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
312.595
|
272.086
|
791.355
|
352.009
|
128.559
|
131.819
|
134.239
|
524.282
|
50.100
|
454.645
|
281.269
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.312
|
0.234
|
-1.061
|
-1.486
|
— | — |
1.886
|
-1.821
|
-3.264
|
— | — | — | — |
No JSON data available for plots.