Hg_chrom4_TN10mRNA_8077
Organism: Heterodera glycines Gene Locus: chr4:6218882-6223641 Feature type: polypeptideProtein Sequence
Length: 1,066
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.676 | 0.851 | 0.785 | 0.712 | 1.188 | 0.842 | 0.782 | 1.173 | 0.917 | 1.775 | 0.768 | 1.324 | 2.059 | 0.794 | 1.206 | 1.153 | 0.8 | 0.952 | 1.371 | 0.524 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7591
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
KIIEKKDESKQTERGKTAKGEEEEKREGKIKEEKEQKGGGKESGEGEEKREGKEEKEQKGGGKGSEEGKGKE
|
— | — | — | — | — | — |
0.001
|
— | — |
0.108
|
0.102
|
0.005
|
0.112
|
0.408
|
0.584
|
0.540
|
0.021
|
0.521
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008713
|
1.000
|
1.000
|
Hsc_gene_24296.t1
|
Hsc_gene_24296.t1
|
— |
Q9XWL9.3 Patched-related protein 18 [Caenorhabditis elegans]
|
KAI1724579.1 patched family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.854|GO:0005575_0.849|GO:0110165_0.849|GO:0016020_0.800|GO:0005886_0.780|GO:0071944_0.780|GO:0009987_0.688|GO:0032501_0.607|GO:0051179_0.599|GO:0006810_0.564|GO:0051234_0.564|GO:0043226_0.542|GO:0005622_0.540
|
IPR000731+283-442+|IPR003392+31-1005+|IPR051697+2-1007+
|
— |
PF02460+31-1005+Patched_family
|
G3DSA:1.20.1640.10:FF:000013+790-1009+PaTched_Related_family
|
PTHR10796+2-1007+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
458-567;1066-1066
|
2.000
|
1-457;568-1065
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
120815.310
|
7.016
|
7.500
|
24.765
|
13.321
|
44.653
|
55.347
|
13.321
|
11.445
|
45.779
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
427.737
|
440.020
|
649.672
|
682.793
|
425.874
|
251.322
|
774.339
|
389.566
|
36.505
|
488.876
|
295.002
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.333
|
0.497
|
0.181
|
-0.714
|
-0.745
|
1.633
|
0.521
|
1.136
|
— | — | — | — | — |
No JSON data available for plots.