Hg_chrom4_TN10mRNA_8078
Organism: Heterodera glycines Gene Locus: chr4:6224410-6228268 Feature type: polypeptideProtein Sequence
Length: 865
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 0.511 | 1.093 | 0.598 | 1.734 | 1.008 | 1.252 | 0.809 | 1.079 | 0.797 | 1.016 | 1.496 | 1.156 | 1.089 | 1.699 | 0.941 | 1.061 | 0.596 | 0.622 | 0.374 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7592
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
mitochondria
|
RRTLLHGFDLLIRKIKKE,RKIKKEEGEKEKTKGKRKM,KKEEGEKEKTKGKRKMGRR,RKKRIATGRDHIGGKSSGRGDGRWWGRGDGRRREGEAEEGGRRRRQSG
|
54-77
|
0.989
|
— | — | — |
0.587
|
0.001
|
1.000
|
— |
0.111
|
0.019
|
0.033
|
0.222
|
0.214
|
0.281
|
0.370
|
0.161
|
0.888
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002098
|
1.000
|
3.000
|
Hsc_gene_24295.t1;Hsc_gene_24295.t2;Hsc_gene_24295.t3
|
Hsc_gene_24295.t1;Hsc_gene_24295.t2;Hsc_gene_24295.t3
|
— |
Q21540.2 Cuticlin-6 [Caenorhabditis elegans]
|
KAI1713555.1 cuticlin-1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.946|GO:0110165_0.946|GO:0071944_0.816|GO:0030312_0.569|GO:0031012_0.552|GO:0062023_0.548|GO:0060102_0.540
|
IPR001507+56-304_56-308_57-295+|IPR051962+42-785+
|
SM00241+56-308+
|
PF00100+57-295+Zona_pellucida-like_domain
|
— |
PTHR22907+42-785+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
299-865
|
1.000
|
1-298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
95956.560
|
6.009
|
-5.000
|
33.064
|
7.861
|
52.254
|
47.746
|
16.647
|
16.416
|
49.480
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
136.984
|
97.399
|
111.575
|
44.680
|
41.129
|
110.537
|
54.675
|
121.394
|
10.703
|
373.259
|
217.878
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.261
|
-1.210
|
— |
1.443
|
-1.005
|
— |
-1.008
|
-5.247
|
— | — | — | — |