Hg_chrom4_TN10mRNA_8079
Organism: Heterodera glycines Gene Locus: chr4:6229275-6235318 Feature type: polypeptideProtein Sequence
Length: 949
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.968 | 0.956 | 0.939 | 0.4 | 1.001 | 0.811 | 0.753 | 0.79 | 1.452 | 1.182 | 0.702 | 1.302 | 1.873 | 0.993 | 0.903 | 1.054 | 1.002 | 1.373 | 1.135 | 0.496 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7593
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
nucleus
|
RRMTGNGDISSKKFRE
|
— | — | — | — |
1-30
|
0.908
|
0.551
|
8.000
|
8.000
|
0.079
|
0.196
|
0.010
|
0.123
|
0.397
|
0.365
|
0.383
|
0.014
|
0.852
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008714
|
1.000
|
1.000
|
Hsc_gene_24294.t1
|
Hsc_gene_24294.t1
|
— |
P70549.1 Sodium/calcium exchanger 3 [Rattus norvegicus]
|
KAI1727170.1 calx-beta domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005432|GO:0006816|GO:0007154|GO:0016020|GO:0055085
|
GO:0008150_0.918|GO:0005575_0.898|GO:0110165_0.898|GO:0006810_0.850|GO:0051179_0.850|GO:0051234_0.850|GO:0016020_0.819|GO:0071944_0.819|GO:0005886_0.806|GO:0009987_0.769|GO:0006811_0.753|GO:0003674_0.727|GO:0055085_0.723|GO:0005215_0.681|GO:0022857_0.681|GO:0065007_0.674|GO:0032501_0.640|GO:0034220_0.639|GO:0098660_0.632|GO:0015075_0.618|GO:0006812_0.598|GO:0098655_0.597|GO:0098662_0.597|GO:0030001_0.596|GO:0008324_0.587|GO:0015318_0.584|GO:0006814_0.577|GO:0030054_0.562|GO:0022890_0.554|GO:0035725_0.554|GO:0046873_0.553|GO:0050896_0.547|GO:0005622_0.546|GO:0050789_0.543|GO:0015081_0.537|GO:0043226_0.526|GO:0022804_0.523|GO:0006816_0.519|GO:0070588_0.519|GO:0015291_0.517|GO:0022853_0.517|GO:0045202_0.502
|
IPR003644+439-541_566-665_572-678+|IPR004836+93-949_780-792_793-804_806-818_819-832+|IPR004837+134-301_775-938+|IPR032452+366-433+|IPR038081+443-570_451-583_571-710_577-704+|IPR044880+183-323_734-941+|IPR051171+86-946+
|
SM00237+439-541_566-665+
|
PF01699+134-301_775-938+Sodium/calcium_exchanger_protein|PF03160+572-678+Calx-beta_domain|PF16494+366-433+C-terminal_extension_of_sodium/calcium_exchanger_domain
|
— |
PTHR11878+86-946+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-949
|
2qvm_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
104784.380
|
5.255
|
-12.500
|
21.812
|
11.486
|
42.571
|
57.429
|
10.643
|
11.170
|
52.792
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
1954.421
|
2839.294
|
3541.069
|
2071.060
|
1880.379
|
2898.660
|
2424.538
|
4898.517
|
742.914
|
285.836
|
481.727
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.592
|
-0.665
|
-0.171
|
0.640
|
-0.249
|
0.655
|
-0.875
|
— | — | — | — | — |