SCN Proteipedia

Hg_chrom4_TN10mRNA_8080

Organism: Heterodera glycines Gene Locus: chr4:6236722-6243075 Feature type: polypeptide

Protein Sequence

Length: 981

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.593	0.853	1.205	0.738	1.359	1.098	0.655	1.172	1.427	1.226	0.865	1.559	1.614	1.137	0.936	0.743	1.003	1.112	0.549	0.78	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7594	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.811

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	RRRK,RRLWGDMFFDTALKKFTKK	—	—	—	—	—	—	0.000	—	—	0.687	0.155	0.045	0.540	0.198	0.237	0.119	0.032	0.152	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008715	1.000	1.000	Hsc_gene_24293.t1	Hsc_gene_24293.t1	—	Q5F3X4.1 116 kDa U5 small nuclear ribonucleoprotein component [Gallus gallus]	KAF7629970.1 Tr-type G domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525	GO:0005575_0.825\|GO:0110165_0.814\|GO:0008150_0.773\|GO:0005622_0.719\|GO:0009987_0.667\|GO:0016020_0.614\|GO:0043226_0.595\|GO:0043229_0.573\|GO:0005737_0.558\|GO:0003674_0.530\|GO:0043227_0.502	IPR000640+834-922_834-923+\|IPR000795+131-338_133-315+\|IPR004161+498-572+\|IPR005517+711-832_718-831+\|IPR009000+448-576+\|IPR014721+675-829+\|IPR020568+668-836+\|IPR027417+118-442_123-302+\|IPR031950+4-113+\|IPR035647+594-666_837-924+\|IPR035655+837-916+\|IPR044121+134-336+	SM00838+834-923+\|SM00889+711-832+	PF00009+133-315+Elongation_factor_Tu_GTP_binding_domain\|PF00679+834-922+Elongation_factor_G_C-terminus\|PF03144+498-572+Elongation_factor_Tu_domain_2\|PF03764+718-831+Elongation_factor_G,_domain_IV\|PF16004+4-113+116_kDa_U5_small_nuclear_ribonucleoprotein_component_N-terminus	G3DSA:2.40.30.10:FF:000029+448-590+116_kDa_U5_small_nuclear_ribonucleoprotein_component\|G3DSA:3.30.230.10:FF:000009+675-829+116_kDa_U5_small_nuclear_ribonucleoprotein_component\|G3DSA:3.30.70.240:FF:000004+830-951+116_kDa_U5_small_nuclear_ribonucleoprotein\|G3DSA:3.30.70.870:FF:000002+593-669+Translation_elongation_factor_2\|G3DSA:3.40.50.300:FF:000646+126-323+U5_small_nuclear_ribonucleoprotein_component\|G3DSA:3.90.1430.10:FF:000001+324-431+116_kDa_U5_small_nuclear_ribonucleoprotein_component	PTHR42908+118-966+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-67	1.000	68-981	6qx9_5C	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.688	111302.310	4.780	-32.500	27.421	11.519	46.687	53.313	12.640	14.781	47.604

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	brown	2602.105	3888.349	2963.106	4475.214	4484.210	3234.537	3630.030	1690.079	1346.388	1237.348	1284.079

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.621	—	0.703	—	-0.456	0.177	-1.040	1.245	—	1.912	—	—	—

No JSON data available for plots.

Back to Browser