SCN Proteipedia

Hg_chrom4_TN10mRNA_8081

Organism: Heterodera glycines Gene Locus: chr4:6242991-6247593 Feature type: polypeptide

Protein Sequence

Length: 849

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.972	1.123	0.985	0.731	1.983	0.966	0.589	0.648	1.047	1.305	1.481	1.594	1.014	0.408	1.418	1.043	0.637	0.375	0.815	0.901	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7595	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKRR,KKALIFIYKTEHRMKRA,KRANSVNLKDNAMRRRAQ	—	—	—	—	—	—	0.000	—	—	0.932	0.049	0.019	0.307	0.036	0.036	0.028	0.019	0.048	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008716	1.000	1.000	Hsc_gene_24292.t1	Hsc_gene_24292.t1	—	—	KAI1728849.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]	No	-0.180

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.944\|GO:0009987_0.901\|GO:0003674_0.851\|GO:0065007_0.835\|GO:0050789_0.821\|GO:0005488_0.812\|GO:0050794_0.802\|GO:0008152_0.772\|GO:0043170_0.770\|GO:0044238_0.770\|GO:0051179_0.745\|GO:0006139_0.743\|GO:0048518_0.736\|GO:0090304_0.733\|GO:0019222_0.729\|GO:0048522_0.727\|GO:0060255_0.720\|GO:0080090_0.718\|GO:0019219_0.693\|GO:0005575_0.679\|GO:0110165_0.679\|GO:0044877_0.664\|GO:0005622_0.635\|GO:0016020_0.597\|GO:0043226_0.595\|GO:0043229_0.576\|GO:0043227_0.519	IPR002110+546-614_551-580_551-583_584-613_584-616_630-660_630-662_631-661+\|IPR011990+3-417_36-152_182-418+\|IPR036770+538-697_548-670+\|IPR052311+194-811+	SM00248+551-580_584-613_630-660+	PF00023+631-661+Ankyrin_repeat\|PF12796+546-614+Ankyrin_repeats_(3_copies)	—	PTHR46358+194-811+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	483-527;708-849	2.000	1-482;528-707	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.545	97661.580	6.591	0.500	35.336	9.069	55.124	44.876	18.021	17.314	41.461

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	1944.370	3472.895	1915.867	2041.949	1972.891	1737.737	1654.909	2226.604	2241.587	1191.859	1641.743

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.088	-0.903	0.201	—	-0.168	—	—	-0.286	—	—	—	—	—

No JSON data available for plots.

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