SCN Proteipedia

Hg_chrom4_TN10mRNA_8087

Organism: Heterodera glycines Gene Locus: chr4:6294356-6297376 Feature type: polypeptide

Protein Sequence

Length: 451

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.521	1.392	0.524	0.306	0.887	1.08	0.581	1.441	0.394	0.959	0.504	1.696	1.047	1.535	1.086	1.996	0.981	0.571	1.023	0.783	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7601	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.876

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	54-139	0.996	—	—	0.000	—	—	0.809	0.136	0.008	0.424	0.053	0.050	0.091	0.020	0.042	0.074

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008720	1.000	1.000	Hsc_gene_24385.t1	Hsc_gene_24385.t1	—	Q93356.2 Homeobox protein ceh-37 [Caenorhabditis elegans]	XP_015778763.1 PREDICTED: homeobox protein OTX-like isoform X2 [Acropora digitifera];XP_029190298.1 homeobox protein OTX isoform X1 [Acropora millepora]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.912\|GO:0009987_0.789\|GO:0032501_0.741\|GO:0032502_0.722\|GO:0048856_0.722\|GO:0065007_0.716\|GO:0050789_0.710\|GO:0050794_0.706\|GO:0005575_0.689\|GO:0110165_0.682\|GO:0007275_0.676\|GO:0003674_0.638\|GO:0005488_0.638\|GO:0008152_0.632\|GO:0019222_0.632\|GO:0031323_0.632\|GO:0044237_0.632\|GO:0005622_0.630\|GO:0044238_0.620\|GO:0080090_0.620\|GO:0009058_0.618\|GO:0009889_0.618\|GO:0031326_0.618\|GO:0044249_0.618\|GO:0043170_0.616\|GO:0060255_0.616\|GO:0006139_0.613\|GO:0009059_0.613\|GO:0016070_0.613\|GO:0032774_0.613\|GO:0034654_0.613\|GO:0090304_0.613\|GO:0141187_0.613\|GO:0043226_0.611\|GO:0048731_0.611\|GO:0010467_0.610\|GO:0010468_0.607\|GO:0010556_0.607\|GO:0019219_0.607\|GO:0051252_0.607\|GO:0003676_0.605\|GO:0097159_0.605\|GO:0043229_0.604\|GO:0006351_0.597\|GO:0006355_0.591\|GO:2001141_0.591\|GO:0003677_0.572\|GO:0043565_0.572\|GO:0003690_0.530\|GO:1990837_0.515\|GO:0016020_0.503\|GO:0048513_0.502	IPR001356+170-231_172-235_173-229+\|IPR009057+167-233+\|IPR017970+206-229+	SM00389+172-235+	PF00046+173-229+Homeodomain	—	PTHR45793+161-416+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	123-337;428-451	2.000	1-122;338-427	2mgq_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.946	48650.010	8.170	8.500	19.734	10.643	49.889	50.111	11.530	8.204	59.424

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	41.943	44.271	62.725	29.170	25.827	22.317	160.412	30.134	17.898	29.505	24.531

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.740	-0.995	—	—	2.857	—	2.555	—	—	—	—	—

No JSON data available for plots.

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