SCN Proteipedia

Hg_chrom4_TN10mRNA_8089

Organism: Heterodera glycines Gene Locus: chr4:6304034-6310808 Feature type: polypeptide

Protein Sequence

Length: 698

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.983	1.266	1.094	0.79	1.027	0.992	0.802	1.074	1.242	1.452	0.825	1.264	0.756	0.909	1.286	1.023	0.658	0.977	0.661	0.801	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7603	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-Not_Clustered	0.514

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	peroxisomal_targeting_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.359	0.404	0.092	0.554	0.178	0.261	0.167	0.194	0.244	0.102

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008721	1.000	1.000	Hsc_gene_24384.t1	Hsc_gene_24384.t1	—	P15690.1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial [Bos taurus]	KAI1723022.1 molybdopterin oxidoreductase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008137\|GO:0016020\|GO:0016491\|GO:0016651\|GO:0042773\|GO:0051536	GO:0005575_0.838\|GO:0110165_0.838\|GO:0016020_0.734\|GO:0008150_0.699\|GO:0009987_0.638\|GO:0005622_0.632\|GO:0005737_0.565\|GO:0043226_0.564\|GO:0043229_0.552\|GO:0008152_0.523\|GO:0043227_0.520	IPR000283+15-32_82-94_132-142+\|IPR001041+1-57_1-62+\|IPR006656+258-594+\|IPR006963+202-252_202-258+\|IPR010228+2-591+\|IPR015405+625-675+\|IPR019574+62-101_67-106_67-107+\|IPR036010+2-58+\|IPR050123+1-636+	SM00929+67-107+	PF00384+258-594+Molybdopterin_oxidoreductase\|PF09326+625-675+NADH-ubiquinone_oxidoreductase_subunit_G,_C-terminal\|PF10588+67-106+NADH-ubiquinone_oxidoreductase-G_iron-sulfur_binding_region\|PF13510+2-60+2Fe-2S_iron-sulfur_cluster_binding_domain\|PF22117+123-189+NADH-quinone_oxidoreductase_subunit_3,_ferredoxin-like_domain\|PF22151+202-252+NADH-ubiquinone_oxidoreductase_NDSU1/NuoG-like,_4Fe-4S_domain	G3DSA:3.10.20.740:FF:000001+1-107+NADH-quinone_oxidoreductase_subunit_G\|G3DSA:3.30.200.210:FF:000002+193-308+NADH-ubiquinone_oxidoreductase_75_kDa_subunit\|G3DSA:3.30.70.20:FF:000002+114-191+NADH-ubiquinone_oxidoreductase_75_kDa_subunit	PTHR43105+1-636+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	675-698	1.000	1-674	5lc5_G	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.728	77257.180	6.992	4.500	26.074	8.453	46.562	53.438	13.897	12.178	51.289

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	red	2857.819	2910.806	3116.153	2732.144	3341.975	3360.549	2586.668	2540.608	1853.303	3392.142	2732.640

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.131	-0.229	—	0.259	—	-0.367	-0.510	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser