Hg_chrom4_TN10mRNA_8090
Organism: Heterodera glycines Gene Locus: chr4:6310844-6312096 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.445 | 1.144 | 0.994 | 0.942 | 1.548 | 0.42 | 0.781 | 1.639 | 1.336 | 1.698 | 0.911 | 1.607 | 0.911 | 0.315 | 1.338 | 0.625 | 0.896 | 1.242 | 2.522 | 0.643 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7604
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.703
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.325
|
0.288
|
0.015
|
0.612
|
0.258
|
0.308
|
0.491
|
0.064
|
0.235
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003867
|
2.000
|
1.000
|
Hsc_gene_20229.t1
|
— | — |
Q9D0J4.1 ADP-ribosylation factor-like protein 2 [Mus musculus]
|
KAI1723462.1 ADP-ribosylation factor family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.809|GO:0110165_0.809|GO:0005622_0.719|GO:0005737_0.694|GO:0008150_0.687|GO:0016020_0.610|GO:0009987_0.586|GO:0071944_0.575|GO:0003674_0.569|GO:0043226_0.560|GO:0005886_0.546|GO:0043229_0.531|GO:0043227_0.508
|
IPR005225+15-164+|IPR006689+3-175_4-174_18-41_46-70_73-98_118-139+|IPR027417+4-180_13-175+|IPR044612+1-177+
|
SM00175+17-178+|SM00177+1-179+|SM00178+3-175+
|
PF00025+4-174+ADP-ribosylation_factor_family
|
G3DSA:3.40.50.300:FF:001166+7-178+ADP-ribosylation_factor_D
|
PTHR45697+1-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-183
|
1ksj_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
21222.510
|
6.230
|
-1.000
|
30.601
|
12.022
|
46.995
|
53.005
|
15.847
|
14.754
|
43.169
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
289.059
|
287.391
|
360.570
|
353.514
|
395.827
|
360.377
|
329.712
|
435.449
|
199.594
|
168.874
|
182.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.162
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.