Hg_chrom4_TN10mRNA_8092
Organism: Heterodera glycines Gene Locus: chr4:6315215-6317646 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.759 | 1.152 | 0.778 | 0.311 | 1.502 | 0.924 | 0.456 | 0.676 | 1.051 | 1.157 | 1.57 | 0.662 | 0.938 | 0.996 | 1.241 | 1.319 | 0.775 | 0.956 | 2.426 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7606
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.913
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,RLKAK,RKLAKVFEQSIAKDAKK,KGRREASEIRRKNVTEKTKAEIKKIN
|
— | — |
41-81
|
1.000
|
— | — |
0.000
|
— | — |
0.936
|
0.097
|
0.015
|
0.300
|
0.075
|
0.025
|
0.026
|
0.021
|
0.023
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008723
|
1.000
|
1.000
|
Hsc_gene_24382.t1
|
Hsc_gene_24382.t1;Hsc_gene_24382.t2
|
— | — |
CAD2177118.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000953+172-223_173-220_346-400_347-407+|IPR016197+173-223_343-399+|IPR023780+347-393+|IPR051219+171-264+
|
SM00298+172-223_346-400+
|
PF00385+347-393+Chromo_(CHRromatin_Organisation_MOdifier)_domain
|
— |
PTHR22812+171-264+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-444
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
51117.260
|
9.859
|
17.000
|
31.081
|
10.586
|
53.604
|
46.396
|
17.793
|
13.288
|
45.946
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
736.314
|
270.647
|
450.493
|
735.155
|
864.391
|
532.240
|
847.584
|
279.503
|
335.138
|
1477.517
|
987.926
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
1.305
|
0.816
|
0.202
|
-0.685
|
0.683
|
-1.039
|
1.746
|
— | — | — | — | — |
No JSON data available for plots.