Hg_chrom4_TN10mRNA_8094
Organism: Heterodera glycines Gene Locus: chr4:6323613-6326791 Feature type: polypeptideProtein Sequence
Length: 597
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.818 | 0.822 | 0.924 | 1.145 | 0.945 | 0.917 | 1.089 | 1.228 | 1.471 | 0.736 | 0.69 | 1.768 | 0.805 | 1.572 | 1.173 | 0.522 | 0.99 | 0.644 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7608
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
EERREREEKQERKGEEKRIRRRSTG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.412
|
0.331
|
0.050
|
0.655
|
0.115
|
0.099
|
0.181
|
0.138
|
0.116
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003868
|
2.000
|
1.000
|
Hsc_gene_24380.t1
|
Hsc_gene_24380.t1
|
— |
P08243.4 Asparagine synthetase [glutamine-hydrolyzing] [Homo sapiens]
|
KAI1712226.1 asparagine synthase domain-containing protein [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004066|GO:0006529
|
GO:0005575_0.860|GO:0110165_0.860|GO:0008150_0.810|GO:0005622_0.779|GO:0005737_0.699|GO:0009987_0.693|GO:0008152_0.630|GO:0044238_0.546|GO:0044237_0.544|GO:0009058_0.543|GO:0003674_0.526|GO:0044249_0.524
|
IPR001962+220-366_221-454_367-527+|IPR006426+1-370_360-527+|IPR014729+210-514+|IPR017932+2-185_47-165+|IPR029055+1-186_13-184+|IPR050795+1-518+
|
— |
PF00733+220-366_367-527+Asparagine_synthase|PF13537+47-165+Glutamine_amidotransferase_domain
|
G3DSA:3.40.50.620:FF:000263+208-512+Asparagine_synthetase
|
PTHR11772+1-518+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
531-597
|
1.000
|
1-530
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
66600.460
|
8.289
|
13.500
|
26.131
|
11.223
|
44.724
|
55.276
|
14.740
|
11.390
|
48.074
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
661.775
|
3446.232
|
661.798
|
429.833
|
430.913
|
542.379
|
262.041
|
489.055
|
28.102
|
525.846
|
312.527
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.613
|
-3.140
|
-0.512
|
— |
0.347
|
-1.040
|
— |
-0.756
|
-4.324
|
— | — | — | — |
No JSON data available for plots.