Hg_chrom4_TN10mRNA_8095
Organism: Heterodera glycines Gene Locus: chr4:6328883-6335935 Feature type: polypeptideProtein Sequence
Length: 1,348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.587 | 1.052 | 0.796 | 0.691 | 1.051 | 1.027 | 0.477 | 1.298 | 1.187 | 1.444 | 1.034 | 0.829 | 1.525 | 1.312 | 1.06 | 1.357 | 1.095 | 0.821 | 0.913 | 0.764 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7609
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,PKKAK,RKKEDEGQTTPTRKKTD,KKIVTRSVTKKLDRKKED,RKRSRLPTDSLSCKPRLR,KKLDRKKEDEGQTTPTRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.799
|
0.058
|
0.011
|
0.411
|
0.085
|
0.096
|
0.078
|
0.037
|
0.100
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008725
|
1.000
|
1.000
|
Hsc_gene_24379.t1
|
Hsc_gene_24379.t1
|
— | — |
KAF7629953.1 ELYS-bb domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.966|GO:0005575_0.942|GO:0110165_0.942|GO:0009987_0.927|GO:0016020_0.883|GO:0005622_0.880|GO:0043226_0.839|GO:0043229_0.824|GO:0043227_0.793|GO:0043231_0.775|GO:0005737_0.747|GO:0005634_0.660|GO:0071944_0.601|GO:0031974_0.590|GO:0031981_0.590|GO:0043233_0.590|GO:0070013_0.590|GO:0071840_0.590|GO:0005886_0.589|GO:0016043_0.588|GO:0006996_0.527|GO:0044085_0.503
|
IPR052620+124-688+
|
— | — | — |
PTHR21583+124-688+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1019-1348
|
1.000
|
1-1018
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
152820.050
|
8.633
|
35.500
|
25.297
|
11.869
|
50.000
|
50.000
|
14.614
|
10.682
|
48.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
2979.380
|
3291.496
|
1776.122
|
1872.386
|
2007.525
|
2184.944
|
2874.777
|
2586.436
|
1811.829
|
5453.285
|
3892.661
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.119
|
-0.951
|
0.185
|
— | — |
0.405
|
— |
0.295
|
-1.709
|
— | — | — | — |
No JSON data available for plots.