Hg_chrom4_TN10mRNA_8096
Organism: Heterodera glycines Gene Locus: chr4:6335995-6338927 Feature type: polypeptideProtein Sequence
Length: 424
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.713 | 1.152 | 0.943 | 1.627 | 1.101 | 1.149 | 0.365 | 0.943 | 1.153 | 1.179 | 0.965 | 1.804 | 1.31 | 1.043 | 1.444 | 1.617 | 0.696 | 0.679 | 0.726 | 0.416 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7610
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.473
|
0.216
|
0.016
|
0.701
|
0.122
|
0.175
|
0.308
|
0.012
|
0.056
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008726
|
1.000
|
1.000
|
Hsc_gene_24378.t1
|
Hsc_gene_24378.t1
|
— |
Q5R7U7.1 Dynactin subunit 4 [Pongo abelii]
|
KAI1717921.1 dynactin p62 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005869
|
GO:0005575_0.910|GO:0110165_0.904|GO:0005622_0.860|GO:0043226_0.808|GO:0043229_0.803|GO:0043228_0.632|GO:0043232_0.632|GO:0005856_0.575|GO:0015630_0.564|GO:0016020_0.555|GO:0043227_0.505
|
IPR008603+10-413_21-102+
|
— |
PF05502+21-102+Dynactin_p62_family
|
— |
PTHR13034+10-413+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
424-424
|
1.000
|
1-423
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.851
|
48058.010
|
8.155
|
11.000
|
27.123
|
8.962
|
52.123
|
47.877
|
15.330
|
11.792
|
49.528
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
saddlebrown
|
780.215
|
1051.006
|
613.119
|
549.677
|
776.501
|
787.906
|
1262.776
|
795.347
|
349.057
|
963.024
|
699.895
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.008
|
-1.072
|
— |
0.467
|
— |
0.692
|
— |
0.811
|
— | — | — | — | — |
No JSON data available for plots.