Hg_chrom4_TN10mRNA_8097
Organism: Heterodera glycines Gene Locus: chr4:6339494-6341726 Feature type: polypeptideProtein Sequence
Length: 372
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.094 | 0.188 | 0.733 | 0.834 | 0.806 | 1.654 | 2.4 | 1.075 | 0.538 | 0.291 | 0.448 | 1.265 | 0.373 | 3.36 | 0.878 | 0.845 | 0.353 | 0.896 | 0.62 | 0.633 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7611
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.869
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KGPPGPK
|
15-55
|
0.981
|
— | — | — | — |
0.000
|
— | — |
0.035
|
0.046
|
0.011
|
0.124
|
0.426
|
0.321
|
0.302
|
0.003
|
0.735
|
0.312
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008727
|
1.000
|
1.000
|
Hsc_gene_24377.t1
|
Hsc_gene_24377.t1
|
— |
P18831.2 Cuticle collagen 6 [Caenorhabditis elegans]
|
KAF7629959.1 Collagen 5 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.940|GO:0032501_0.850|GO:0032502_0.835|GO:0048856_0.835|GO:0007275_0.827|GO:0005575_0.752|GO:0110165_0.748|GO:0040002_0.670|GO:0042335_0.670|GO:0030312_0.626|GO:0071944_0.626|GO:0031012_0.527|GO:0062023_0.527
|
IPR002486+19-71_22-71+|IPR008160+220-277+|IPR050632+23-357+
|
SM01088+19-71+
|
PF01391+220-277+Collagen_triple_helix_repeat_(20_copies)|PF01484+22-71+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+23-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;97-372
|
1.000
|
9-96
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
36978.060
|
6.083
|
-2.000
|
18.280
|
6.452
|
33.602
|
66.398
|
9.409
|
8.871
|
68.280
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
7470.854
|
2649.226
|
77.367
|
43.305
|
8968.391
|
47682.057
|
292.392
|
17179.840
|
167.672
|
3724.515
|
2200.154
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.328
|
-6.073
|
-0.726
|
7.662
|
2.426
|
-7.340
|
-1.592
|
-5.728
|
-4.584
|
— | — | — | — |
No JSON data available for plots.