Hg_chrom4_TN10mRNA_8102
Organism: Heterodera glycines Gene Locus: chr4:6359923-6361752 Feature type: polypeptideProtein Sequence
Length: 318
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.097 | 0.951 | 0.515 | 1.084 | 1.31 | 0.968 | 1.123 | 1.258 | 0.839 | 0.467 | 1.953 | 0.74 | 0.699 | 0.847 | 1.861 | 1.123 | 1.031 | 0.429 | 0.242 | 0.647 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7616
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKYDEKNCREKKRSE,KKRSESAAETKAGLNKGRKGRAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.282
|
0.142
|
0.019
|
0.791
|
0.055
|
0.025
|
0.131
|
0.021
|
0.140
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002099
|
1.000
|
3.000
|
Hsc_gene_24372.t1;Hsc_gene_24372.t2;Hsc_gene_24372.t3
|
Hsc_gene_24372.t1;Hsc_gene_24372.t2;Hsc_gene_24372.t3
|
— |
Q22122.3 Zinc finger C2HC domain-containing protein T03G11.3 [Caenorhabditis elegans]
|
KAI1730988.1 zinc-finger of a c2HC-type domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR026319+10-242+|IPR049899+20-49_133-162+
|
— |
PF13913+20-44_137-153+zinc-finger_of_a_C2HC-type
|
— |
PTHR13555+10-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-318
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
35143.810
|
10.732
|
40.000
|
35.220
|
7.547
|
57.233
|
42.767
|
24.528
|
10.692
|
50.314
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
345.632
|
833.947
|
682.705
|
280.913
|
78.795
|
29.069
|
31.030
|
313.334
|
367.952
|
392.501
|
381.980
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.521
|
-1.707
|
-1.170
|
-1.865
|
-1.425
|
— |
3.331
|
-3.196
|
— | — | — | — |
7.680
|
No JSON data available for plots.