Hg_chrom4_TN10mRNA_8105
Organism: Heterodera glycines Gene Locus: chr4:6387183-6391823 Feature type: polypeptideProtein Sequence
Length: 634
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.844 | 1.064 | 0.602 | 0.598 | 0.71 | 3.074 | 1.127 | 1.341 | 0.631 | 0.703 | 0.55 | 1.206 | 1.928 | 1.941 | 0.933 | 1.149 | 0.853 | 0.789 | 0.121 | 0.232 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7619
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RALKRYR,PGKKRK.
|
— | — | — | — |
1-25
|
0.993
|
1.000
|
0.000
|
0.000
|
0.318
|
0.162
|
0.052
|
0.196
|
0.083
|
0.023
|
0.102
|
0.114
|
0.112
|
0.908
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008733
|
1.000
|
1.000
|
Hsc_gene_24366.t1
|
Hsc_gene_24366.t1;Hsc_gene_24366.t2
|
— |
Q94128.1 Warthog protein 1 [Caenorhabditis elegans]
|
KAH7703280.1 Protein WRT-9 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.962|GO:0032502_0.870|GO:0048856_0.870|GO:0032501_0.868|GO:0007275_0.828|GO:0048731_0.814|GO:0048513_0.781|GO:0009653_0.749|GO:0022414_0.700|GO:0003006_0.697|GO:0007423_0.696|GO:0009887_0.695|GO:0048608_0.692|GO:0061458_0.692|GO:0090596_0.684|GO:0007548_0.681|GO:0030539_0.670|GO:0035112_0.670|GO:0046661_0.670|GO:0048806_0.670|GO:0048808_0.670|GO:0090597_0.670|GO:0090598_0.670
|
IPR052140+9-434+
|
— | — | — |
PTHR46706+9-434+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
194-634
|
1.000
|
1-193
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.943
|
68822.840
|
8.158
|
12.500
|
18.454
|
10.568
|
48.265
|
51.735
|
10.883
|
7.571
|
54.890
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
1082.790
|
282.094
|
465.271
|
282.867
|
1789.205
|
3066.488
|
1406.100
|
760.921
|
118.631
|
1628.378
|
981.344
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.492
|
— |
-0.608
|
2.628
|
0.794
|
-1.114
|
-2.124
|
1.033
|
-3.895
|
— | — | — | — |