Hg_chrom4_TN10mRNA_8106
Organism: Heterodera glycines Gene Locus: chr4:6392739-6394118 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 0.598 | 0.585 | 2.328 | 1.34 | 1.319 | 1.034 | 0.965 | 0.715 | 0.869 | 0.682 | 0.378 | 1.608 | 1.175 | 1.641 | 1.7 | 0.369 | 0.926 | 0.495 | 0.378 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7620
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.696
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
3-27
|
0.953
|
— | — |
0.000
|
— | — |
0.275
|
0.182
|
0.015
|
0.820
|
0.067
|
0.246
|
0.191
|
0.046
|
0.179
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008734
|
1.000
|
1.000
|
Hsc_gene_24365.t1
|
Hsc_gene_24365.t1
|
— |
P67966.2 Cysteine and glycine-rich protein 1 [Gallus gallus]
|
KAI1709944.1 LIM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.848|GO:0110165_0.842|GO:0008150_0.811|GO:0005622_0.696|GO:0009987_0.692|GO:0003674_0.598|GO:0043226_0.594|GO:0043229_0.567|GO:0005488_0.565|GO:0065007_0.544|GO:0016020_0.523|GO:0005737_0.509
|
IPR001781+14-78_15-71_16-75_235-295_236-288_237-271_237-293+
|
SM00132+15-71_236-288+
|
PF00412+16-75_237-293+LIM_domain
|
G3DSA:2.10.110.10:FF:000001+229-308+Cysteine_and_glycine-rich_protein_1
|
PTHR24215+16-311+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
111-183
|
2.000
|
1-110;184-311
|
1qli_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
34070.490
|
7.812
|
7.000
|
25.723
|
9.646
|
47.588
|
52.412
|
14.469
|
11.254
|
54.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
139.379
|
171.867
|
150.141
|
56.121
|
102.092
|
138.776
|
165.980
|
79.395
|
371.516
|
7.007
|
163.225
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.426
|
-1.752
|
-1.309
|
0.831
|
0.459
|
— |
-0.921
|
1.209
|
5.229
|
-2.570
|
— | — | — |
No JSON data available for plots.