Hg_chrom4_TN10mRNA_8107
Organism: Heterodera glycines Gene Locus: chr4:6395470-6404466 Feature type: polypeptideProtein Sequence
Length: 1,634
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 0.911 | 1.135 | 0.042 | 2.693 | 0.973 | 0.911 | 2.968 | 0.503 | 0.554 | 0.779 | 0.612 | 0.833 | 0.93 | 1.424 | 1.556 | 0.612 | 0.807 | 0.282 | 0.252 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7621
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKLDAAEKVELYRRIRS,RRTSNSRTRQRLPPLPKKR,KREKKEGKREEEEEKREEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.275
|
0.198
|
0.022
|
0.722
|
0.043
|
0.076
|
0.066
|
0.052
|
0.265
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003870
|
1.000
|
2.000
|
Hsc_gene_24363.t1;Hsc_gene_24363.t2
|
— | — | — |
KAI1707575.1 Salivary glue protein Sgs-3 precursor [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR027962+3-142+
|
— | — | — |
PTHR23034+3-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
85-154;194-1634
|
2.000
|
1-84;155-193
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
181763.930
|
4.659
|
-119.500
|
40.453
|
10.159
|
62.791
|
37.209
|
18.054
|
22.399
|
50.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
8717.487
|
24493.701
|
9879.919
|
7195.635
|
3485.754
|
3882.032
|
1632.410
|
10156.649
|
13354.377
|
5350.936
|
8780.982
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.539
|
-1.905
|
-0.349
|
-1.077
|
— |
-1.241
|
1.296
|
-2.501
|
— | — | — | — | — |
No JSON data available for plots.