Hg_chrom4_TN10mRNA_8108
Organism: Heterodera glycines Gene Locus: chr4:6404582-6406215 Feature type: polypeptideProtein Sequence
Length: 172
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.541 | 1.217 | 0.74 | 0.601 | 0.969 | 0.894 | 1.592 | 1.163 | 0.904 | 0.629 | 1.233 | 2.394 | 1.938 | 0.783 | 0.712 | 0.914 | 1.144 | 1.321 | 0.447 | 0.342 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7622
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.268
|
0.618
|
0.091
|
0.578
|
0.203
|
0.163
|
0.067
|
0.402
|
0.323
|
0.423
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000854
|
4.000
|
2.000
|
Hsc_gene_24358.t1;Hsc_gene_24362.t1
|
Hsc_gene_24358.t1;Hsc_gene_24358.t2;Hsc_gene_24362.t1;Hsc_gene_24362.t2
|
— |
P52011.1 Peptidyl-prolyl cis-trans isomerase 3 [Caenorhabditis elegans]
|
KAI3420375.1 Peptidyl-prolyl cis-trans isomerase 3 [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755|GO:0006457
|
GO:0005575_0.819|GO:0110165_0.807|GO:0005622_0.682|GO:0005737_0.620|GO:0003674_0.576|GO:0016020_0.572|GO:0008150_0.559|GO:0043226_0.534|GO:0043229_0.523|GO:0043227_0.506
|
IPR002130+8-170_15-169_25-40_60-72_103-118_118-130_131-146+|IPR020892+55-72+|IPR024936+1-172+|IPR029000+1-172_3-171+
|
— |
PF00160+15-169+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
G3DSA:2.40.100.10:FF:000002+1-172+Peptidyl-prolyl_cis-trans_isomerase
|
PTHR11071+4-171+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-172
|
4jcp_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
18613.230
|
8.726
|
5.000
|
23.837
|
11.047
|
45.930
|
54.070
|
13.953
|
9.884
|
55.233
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1254.442
|
612.745
|
815.289
|
1519.313
|
1991.601
|
1455.263
|
1422.086
|
920.600
|
884.255
|
1548.656
|
1263.912
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.182
|
1.173
|
1.007
|
0.358
|
-0.438
|
— |
-0.769
|
0.772
|
— | — | — | — | — |
No JSON data available for plots.