Hg_chrom4_TN10mRNA_8109
Organism: Heterodera glycines Gene Locus: chr4:6407233-6410367 Feature type: polypeptideProtein Sequence
Length: 318
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.622 | 0.804 | 0.8 | 0.651 | 1.572 | 1.209 | 0.487 | 0.943 | 1.398 | 1.19 | 1.477 | 1.48 | 2.184 | 1.089 | 1.284 | 0.449 | 0.619 | 0.81 | 0.726 | 1.295 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7623
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKNVDYAWQEMKRRLD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.058
|
0.960
|
0.007
|
0.171
|
0.063
|
0.034
|
0.106
|
0.008
|
0.038
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008735
|
1.000
|
1.000
|
Hsc_gene_24361.t1
|
Hsc_gene_24361.t1
|
— |
Q19126.1 ATP synthase F(0) complex subunit B2, mitochondrial [Caenorhabditis elegans]
|
KAH7716203.1 ATP synthase B-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000276|GO:0015078|GO:0015986
|
GO:0005575_0.922|GO:0110165_0.914|GO:0005622_0.862|GO:0016020_0.853|GO:0005737_0.830|GO:0043226_0.812|GO:0043229_0.795|GO:0043227_0.764|GO:0043231_0.737|GO:0005739_0.568|GO:0032991_0.515
|
IPR008688+147-313+|IPR013837+41-317+
|
— |
PF05405+147-313+Mitochondrial_ATP_synthase_B_chain_precursor_(ATP-synt_B)
|
— |
PTHR12733+41-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
37689.770
|
8.995
|
10.000
|
31.761
|
15.094
|
46.855
|
53.145
|
17.925
|
13.836
|
37.107
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
3582.120
|
598.077
|
2499.250
|
4384.460
|
6608.899
|
5613.002
|
2675.361
|
3712.368
|
4145.926
|
2778.047
|
3364.281
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.834
|
2.737
|
0.919
|
0.560
|
-0.221
|
-1.060
|
-0.704
|
-0.330
|
— | — | — | — | — |
No JSON data available for plots.