Hg_chrom4_TN10mRNA_8110
Organism: Heterodera glycines Gene Locus: chr4:6412727-6415227 Feature type: polypeptideProtein Sequence
Length: 536
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 0.955 | 0.509 | 0.836 | 0.684 | 1.005 | 0.8 | 1.306 | 1.036 | 1.689 | 0.594 | 0.878 | 2.228 | 0.933 | 1.447 | 1.066 | 1.07 | 0.961 | 1.292 | 0.768 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7624
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRSEKAAEGNGKGNRR,RRFFVWSKHTANSTPRRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.119
|
0.145
|
0.006
|
0.128
|
0.264
|
0.298
|
0.183
|
0.005
|
0.802
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008736
|
1.000
|
1.000
|
Hsc_gene_24360.t2
|
Hsc_gene_24360.t1;Hsc_gene_24360.t2
|
— |
Q8ITC7.3 Neuropeptides capa receptor [Drosophila melanogaster]
|
KAH7707599.1 CBN-NMUR-3 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.966|GO:0009987_0.935|GO:0065007_0.844|GO:0050789_0.821|GO:0003674_0.800|GO:0050794_0.800|GO:0050896_0.800|GO:0007154_0.778|GO:0023052_0.776|GO:0051716_0.774|GO:0005575_0.772|GO:0110165_0.771|GO:0007165_0.752|GO:0016020_0.729|GO:0060089_0.683|GO:0038023_0.681|GO:0004888_0.663|GO:0071944_0.650|GO:0005886_0.646|GO:0007186_0.624|GO:0005488_0.590|GO:0004930_0.584
|
IPR000276+120-144_129-494_135-479_153-174_201-223_297-320_421-445_461-487+|IPR017452+135-479+
|
SM01381+129-494+
|
PF00001+135-479+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+119-513+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-536
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
60739.470
|
9.946
|
29.000
|
20.522
|
14.925
|
42.537
|
57.463
|
13.619
|
6.903
|
47.388
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
349.782
|
75.916
|
559.521
|
320.098
|
82.700
|
21.925
|
23.570
|
103.811
|
1077.249
|
277.031
|
619.982
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.651
|
1.939
|
-0.696
|
-1.983
|
-1.902
|
— |
2.142
|
-1.995
|
— | — | — | — | — |
No JSON data available for plots.