Hg_chrom4_TN10mRNA_8112
Organism: Heterodera glycines Gene Locus: chr4:6419066-6420662 Feature type: polypeptideProtein Sequence
Length: 155
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.525 | 1.2 | 0.704 | 0.445 | 0.968 | 0.662 | 1.69 | 1.29 | 1.004 | 0.697 | 1.369 | 2.277 | 1.971 | 0.868 | 0.658 | 1.014 | 1.269 | 0.88 | 0.496 | 0.38 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7626
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.281
|
0.535
|
0.092
|
0.541
|
0.163
|
0.102
|
0.047
|
0.301
|
0.300
|
0.414
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000854
|
4.000
|
2.000
|
Hsc_gene_24358.t1;Hsc_gene_24362.t1
|
— | — |
P52015.2 Peptidyl-prolyl cis-trans isomerase 7 [Caenorhabditis elegans]
|
KAI3420375.1 Peptidyl-prolyl cis-trans isomerase 3 [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755|GO:0006457
|
GO:0005575_0.777|GO:0110165_0.772|GO:0005622_0.668|GO:0005737_0.614|GO:0003674_0.563|GO:0008150_0.556|GO:0016020_0.553|GO:0043226_0.527|GO:0043229_0.518
|
IPR002130+8-155_15-135_25-40_61-73_104-119_119-131+|IPR020892+56-73+|IPR024936+1-153+|IPR029000+1-155_3-154+
|
— |
PF00160+15-135+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
G3DSA:2.40.100.10:FF:000013+1-154+Peptidyl-prolyl_cis-trans_isomerase
|
PTHR11071+4-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-155
|
4jcp_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.966
|
16738.040
|
9.545
|
6.000
|
24.516
|
11.613
|
47.097
|
52.903
|
14.839
|
9.677
|
54.194
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
758.191
|
242.213
|
193.398
|
261.365
|
250.183
|
211.954
|
475.419
|
413.272
|
1448.269
|
1462.957
|
1456.662
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.553
|
— |
0.543
|
— | — |
1.177
|
0.858
|
0.346
|
— |
-2.334
|
-2.402
|
— | — |
No JSON data available for plots.