Hg_chrom4_TN10mRNA_8114
Organism: Heterodera glycines Gene Locus: chr4:6425482-6427811 Feature type: polypeptideProtein Sequence
Length: 375
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.961 | 0.868 | 0.873 | 1.103 | 0.667 | 1.368 | 1.016 | 1.6 | 0.948 | 1.369 | 0.606 | 1.098 | 1.037 | 0.615 | 1.034 | 1.524 | 0.743 | 0.808 | 1.231 | 1.333 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7628
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
26-83
|
0.972
|
— | — | — | — |
0.000
|
— | — |
0.558
|
0.093
|
0.007
|
0.625
|
0.273
|
0.204
|
0.213
|
0.172
|
0.099
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008738
|
1.000
|
1.000
|
Hsc_gene_24356.t1
|
Hsc_gene_24356.t1
|
— |
P49355.1 Protein farnesyltransferase subunit beta [Bos taurus]
|
KAH7730062.1 prenyltransferase and squalene oxidase repeat family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0005965|GO:0008318|GO:0018343
|
GO:0008150_0.898|GO:0009987_0.812|GO:0003674_0.714|GO:0005575_0.683|GO:0110165_0.596|GO:0003824_0.589|GO:0016740_0.533|GO:0005622_0.513|GO:0008152_0.508
|
IPR001330+95-128_136-178_192-227_234-277_304-335+|IPR008930+8-374+|IPR026872+39-337+|IPR045089+34-374+
|
— |
PF00432+95-128_136-178_192-227_234-277_304-335+Prenyltransferase_and_squalene_oxidase_repeat
|
— |
PTHR11774+34-374+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-375
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
41319.710
|
7.587
|
7.000
|
21.067
|
13.067
|
45.333
|
54.667
|
12.267
|
8.800
|
52.267
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
961.088
|
1082.950
|
591.002
|
706.236
|
676.697
|
585.181
|
728.420
|
689.347
|
1710.461
|
1024.476
|
1318.469
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.103
|
-0.754
|
0.365
|
— |
-0.195
|
0.326
|
— |
0.222
|
— | — | — | — | — |
No JSON data available for plots.