Hg_chrom4_TN10mRNA_8115
Organism: Heterodera glycines Gene Locus: chr4:6427950-6429788 Feature type: polypeptideProtein Sequence
Length: 274
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.085 | 1.443 | 1.062 | 0.881 | 0.73 | 1.872 | 0.608 | 1.46 | 1.135 | 0.986 | 1.272 | 1.717 | 1.622 | 0.842 | 1.49 | 1.043 | 0.718 | 0.829 | 1.123 | 1.503 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7629
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.793
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRNRDNLYQNKEKRGLKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.447
|
0.364
|
0.013
|
0.564
|
0.039
|
0.028
|
0.087
|
0.070
|
0.195
|
0.296
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008739
|
1.000
|
1.000
|
Hsc_gene_24355.t1
|
Hsc_gene_24355.t1
|
— | — |
KAI1724033.1 immunoglobulin i-set domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.953|GO:0009987_0.909|GO:0005575_0.850|GO:0110165_0.847|GO:0071840_0.696|GO:0016043_0.678|GO:0065007_0.651|GO:0050789_0.642|GO:0032501_0.639|GO:0016020_0.633|GO:0050794_0.629|GO:0032502_0.623|GO:0048856_0.623|GO:0005622_0.615|GO:0043226_0.587|GO:0050896_0.579|GO:0048869_0.577|GO:0030154_0.573|GO:0048468_0.565|GO:0003674_0.537|GO:0005737_0.511|GO:0043229_0.511
|
IPR007110+117-189+|IPR013098+117-188+|IPR013783+111-196+|IPR036179+114-189+|IPR051129+69-187+
|
— |
PF07679+117-188+Immunoglobulin_I-set_domain
|
— |
PTHR47633+69-187+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-86
|
1.000
|
87-274
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
32631.250
|
9.842
|
19.000
|
28.832
|
15.328
|
54.015
|
45.985
|
18.613
|
10.219
|
41.971
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
green
|
1819.786
|
511.449
|
538.538
|
409.731
|
204.552
|
144.020
|
89.661
|
226.510
|
1730.994
|
5866.645
|
4094.223
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.155
|
-0.457
|
-0.286
|
-1.034
|
-0.492
|
-0.678
|
0.550
|
-1.200
|
— |
-1.930
|
-4.759
|
— | — |
No JSON data available for plots.