Hg_chrom4_TN10mRNA_8116
Organism: Heterodera glycines Gene Locus: chr4:6431727-6432680 Feature type: polypeptideProtein Sequence
Length: 215
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.324 | 1.514 | 1.184 | 0.481 | 1.628 | 1.073 | 0.941 | 0.465 | 1.344 | 0.629 | 1.762 | 1.642 | 1.034 | 0.358 | 1.898 | 0.997 | 0.915 | 0.634 | 0.358 | 0.821 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7630
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRTQYEKALIKRKSQ,RREMERYDGEKRGIR,RRKINYEIRKNKGIRKDKG,RKINYEIRKNKGIRKDKGRRKAKQRHSRVMKRTQYEKALIKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.922
|
0.060
|
0.024
|
0.234
|
0.110
|
0.065
|
0.053
|
0.004
|
0.082
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008740
|
1.000
|
1.000
|
Hsc_gene_24353.t1
|
Hsc_gene_24353.t1
|
— | — |
KAI1726082.1 something about silencing protein 10 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.934|GO:0110165_0.927|GO:0008150_0.916|GO:0005622_0.900|GO:0043226_0.886|GO:0043229_0.881|GO:0016020_0.849|GO:0043227_0.807|GO:0043231_0.801|GO:0005634_0.773|GO:0009987_0.530|GO:0043228_0.509|GO:0043232_0.505|GO:0003674_0.502
|
IPR018972+141-215+
|
— |
PF09368+141-215+Sas10_C-terminal_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
83-215
|
1.000
|
1-82
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
24932.070
|
9.996
|
11.000
|
38.140
|
7.907
|
61.395
|
38.605
|
21.860
|
16.279
|
43.721
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1252.406
|
863.698
|
618.611
|
748.455
|
811.311
|
709.318
|
676.551
|
932.959
|
1505.259
|
2339.995
|
1982.251
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.710
|
-0.344
|
0.383
|
— |
-0.179
|
— |
0.292
|
-0.320
|
— | — | — | — | — |
No JSON data available for plots.