Hg_chrom4_TN10mRNA_8118
Organism: Heterodera glycines Gene Locus: chr4:6433431-6434509 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.8 | 0.942 | 1.472 | 0.0 | 1.687 | 1.038 | 0.482 | 1.822 | 1.26 | 0.985 | 1.595 | 2.143 | 1.237 | 0.545 | 1.818 | 0.521 | 0.664 | 0.429 | 0.311 | 1.429 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7632
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm
|
— |
KRRK,RKINHEHVVEEDRRLKL,RRLKLPNNFEAKRKRQE,RRMFDPDAPIDFINERNRK
|
— | — | — | — | — | — |
0.003
|
— | — |
0.395
|
0.324
|
0.020
|
0.570
|
0.397
|
0.087
|
0.341
|
0.009
|
0.088
|
0.282
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008741
|
1.000
|
1.000
|
Hsc_gene_24352.t1
|
Hsc_gene_24352.t1
|
— |
Q612R3.2 Pre-mRNA-splicing factor syf-2 [Caenorhabditis briggsae]
|
KAI1730910.1 SYF2 splicing factor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.743|GO:0110165_0.742|GO:0005622_0.690|GO:0016020_0.669|GO:0043226_0.663|GO:0008150_0.656|GO:0043229_0.645|GO:0009987_0.600|GO:0043227_0.596|GO:0043231_0.579|GO:0032991_0.538|GO:0005634_0.507
|
IPR013260+29-247_92-242+
|
— |
PF08231+92-242+SYF2_splicing_factor
|
— |
PTHR13264+29-247+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
95-247
|
1.000
|
1-94
|
8ro1_M
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.496
|
29485.400
|
9.211
|
7.500
|
41.296
|
13.360
|
57.085
|
42.915
|
23.077
|
18.219
|
36.437
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2616.035
|
2173.493
|
2190.106
|
2330.706
|
2588.781
|
2237.889
|
1621.017
|
2851.448
|
4106.600
|
2367.661
|
3112.920
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.218
|
— |
0.199
|
0.120
|
-0.196
|
-0.454
|
0.244
|
-0.671
|
— | — | — | — | — |
No JSON data available for plots.