SCN Proteipedia

Hg_chrom4_TN10mRNA_8119

Organism: Heterodera glycines Gene Locus: chr4:6434702-6437013 Feature type: polypeptide

Protein Sequence

Length: 303

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.305	0.768	0.96	0.91	1.155	0.931	0.589	0.495	1.393	1.16	0.9	1.553	0.825	0.889	1.482	1.32	0.92	0.9	0.254	0.485	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7633	—	—	1.222	1.000	1.000	1.000	2.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.833	0.155	0.154	0.294	0.138	0.062	0.044	0.016	0.226	0.017

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008742	1.000	1.000	Hsc_gene_24351.t1	Hsc_gene_24351.t1	—	O16991.2 Transcription initiation factor IIB [Caenorhabditis elegans]	KAI6220634.1 General transcription factor TFIIB [Aphelenchoides fujianensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0006352\|GO:0017025\|GO:0070897	GO:0005575_0.898\|GO:0110165_0.889\|GO:0005622_0.835\|GO:0016020_0.819\|GO:0008150_0.807\|GO:0043226_0.794\|GO:0043229_0.776\|GO:0009987_0.751\|GO:0043227_0.731\|GO:0043231_0.720\|GO:0005634_0.599\|GO:0003674_0.566\|GO:0005488_0.536\|GO:0008152_0.525\|GO:0009058_0.520\|GO:0044238_0.516\|GO:0044237_0.515\|GO:0043170_0.514\|GO:0044249_0.505	IPR000812+3-292_17-37_39-52_53-74_148-167_174-189_201-219_235-251_267-281+\|IPR013137+1-32_4-45+\|IPR013150+98-187_194-280+\|IPR013763+106-187_200-281+\|IPR023486+140-155_234-249+\|IPR036915+103-194_196-301+	SM00385+106-187_200-281+	PF00382+98-187_194-280+Transcription_factor_TFIIB_repeat\|PF08271+4-45+TFIIB_zinc-binding	G3DSA:1.10.472.10:FF:000008+197-302+Transcription_initiation_factor_IIB\|G3DSA:1.10.472.10:FF:000019+82-192+transcription_initiation_factor_IIB\|G3DSA:1.10.472.170:FF:000001+4-188+Transcription_initiation_factor_IIB	PTHR11618+3-292+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-7;303-303	1.000	8-302	8was_R	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.751	33142.980	8.081	4.500	26.403	5.941	48.185	51.815	14.191	12.211	52.805

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	turquoise	1705.150	879.876	1058.681	1128.711	1251.100	1304.861	1774.878	1146.645	510.420	3872.934	2431.856

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.222	0.201	0.117	—	0.455	-0.293	0.774	-3.046	—	—	—	—

No JSON data available for plots.

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