SCN Proteipedia

Hg_chrom4_TN10mRNA_8124

Organism: Heterodera glycines Gene Locus: chr4:6446429-6451262 Feature type: polypeptide

Protein Sequence

Length: 1,048

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.766	0.821	0.781	0.592	0.668	2.031	0.943	1.431	1.166	0.993	0.694	1.965	1.113	1.303	1.285	0.872	1.032	1.142	0.367	0.926	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7638	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.553

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	FKVK,KRKYR	—	—	—	—	—	—	0.000	—	—	0.539	0.156	0.049	0.655	0.166	0.298	0.161	0.030	0.247	0.093

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008743	1.000	1.000	Hsc_gene_24349.t1	Hsc_gene_24349.t1	—	Q9UKV8.3 Protein argonaute-2 [Homo sapiens]	KAI1709334.1 piwi domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0005515	GO:0008150_0.965\|GO:0005575_0.852\|GO:0110165_0.851\|GO:0009987_0.824\|GO:0065007_0.818\|GO:0050789_0.804\|GO:0005622_0.783\|GO:0003674_0.773\|GO:0050794_0.770\|GO:0008152_0.749\|GO:0005488_0.726\|GO:0043170_0.721\|GO:0016020_0.701\|GO:0043226_0.691\|GO:0043229_0.667\|GO:0044237_0.658\|GO:0009058_0.656\|GO:0044238_0.656\|GO:0019222_0.643\|GO:0031323_0.641\|GO:0009059_0.635\|GO:0044249_0.635\|GO:0060255_0.629\|GO:0010467_0.622\|GO:0009889_0.617\|GO:0031326_0.609\|GO:0010556_0.608\|GO:0010468_0.606\|GO:0006139_0.604\|GO:0005737_0.585\|GO:0090304_0.584\|GO:0097159_0.582\|GO:0043227_0.579\|GO:0043231_0.570\|GO:0016070_0.567\|GO:0032502_0.564\|GO:0003676_0.562\|GO:0048519_0.552\|GO:0048523_0.538\|GO:0043228_0.509\|GO:0043232_0.508\|GO:0048856_0.504\|GO:0032501_0.502\|GO:0003723_0.501	IPR003100+417-537_423-559_442-554+\|IPR003165+706-1007_707-1006+\|IPR012337+703-1008+\|IPR014811+326-415_378-414+\|IPR032472+563-609+\|IPR032473+619-700+\|IPR032474+187-317+\|IPR036085+189-574+\|IPR036397+771-1048+\|IPR045246+581-1006+	SM00949+423-559+\|SM00950+706-1007+\|SM01163+326-415+	PF02170+442-554+PAZ_domain\|PF02171+707-1006+Piwi_domain\|PF08699+378-414+Argonaute_linker_1_domain\|PF16486+187-317+N-terminal_domain_of_argonaute\|PF16487+619-700+Mid_domain_of_argonaute\|PF16488+563-609+Argonaute_linker_2_domain	G3DSA:2.170.260.10:FF:000001+409-542+Protein_argonaute-2\|G3DSA:3.30.420.10:FF:000001+771-1048+Protein_argonaute-2\|G3DSA:3.40.50.2300:FF:000005+601-770+Protein_argonaute-2	PTHR22891+179-1012+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-188	1.000	189-1048	1r4k_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.879	116546.530	9.533	42.000	22.042	10.496	45.897	54.103	13.740	8.302	50.763

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2676.882	4853.533	3809.027	2993.253	2834.926	2550.466	2683.386	2756.275	2346.847	1520.900	1874.877

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.578	-0.834	-0.240	-0.110	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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