SCN Proteipedia

Hg_chrom4_TN10mRNA_8134

Organism: Heterodera glycines Gene Locus: chr4:6480300-6482129 Feature type: polypeptide

Protein Sequence

Length: 448

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.779	1.298	1.055	0.616	1.414	1.259	0.93	1.116	1.042	0.965	0.507	2.495	1.364	0.859	1.002	0.797	1.025	0.981	0.687	1.116	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7647	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.899

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KRISEQFTSMFRRKAF	—	—	—	—	—	—	0.000	—	—	0.383	0.261	0.124	0.655	0.082	0.186	0.193	0.183	0.170	0.228

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000302	5.000	4.000	Hsc_gene_18906.t1;Hsc_gene_24340.t1;Hsc_gene_558.t1;Hsc_gene_5981.t1	Hsc_gene_11418.t1;Hsc_gene_24340.t1	B0272.1;C36E8.5;C54C6.2;ZK154.3	P41937.1 Tubulin beta-4 chain [Caenorhabditis elegans]	KAI1722179.1 tubulin/FtsZ family, GTPase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017	GO:0005575_0.790\|GO:0110165_0.782\|GO:0008150_0.754\|GO:0005622_0.651\|GO:0009987_0.622\|GO:0016020_0.599\|GO:0043226_0.567\|GO:0043229_0.510	IPR000217+1-427_10-30_51-70_93-104_106-130_132-150_151-172_176-189_190-210_370-398+\|IPR002453+41-58_88-99_108-126_152-164_212-224_230-239_245-258_265-281_311-329_329-343_347-370_377-388_412-430+\|IPR003008+3-211_47-244+\|IPR008280+244-428+\|IPR013838+1-4+\|IPR017975+140-146+\|IPR018316+246-383_261-382+\|IPR023123+374-445+\|IPR036525+1-243_1-263+\|IPR037103+264-373+	SM00864+47-244+\|SM00865+246-383+	PF00091+3-211+Tubulin/FtsZ_family,_GTPase_domain\|PF03953+261-382+Tubulin_C-terminal_domain	G3DSA:1.10.287.600:FF:000006+374-445+Tubulin_beta_chain\|G3DSA:3.30.1330.20:FF:000002+264-373+Tubulin_beta_chain\|G3DSA:3.40.50.1440:FF:000003+1-263+Tubulin_beta_chain	PTHR11588+1-427+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	411-448	1.000	1-410	9g0r_F	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.681	50344.530	4.466	-22.000	24.777	11.830	47.098	52.902	10.491	14.286	50.446

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	381.473	1088.299	1175.252	492.096	160.225	162.543	86.043	434.557	68.968	267.588	182.465

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.119	-1.282	-1.147	-1.650	—	-0.906	1.315	-2.193	—	—	—	—	—

No JSON data available for plots.

Back to Browser