Hg_chrom4_TN10mRNA_8135
Organism: Heterodera glycines Gene Locus: chr4:6483109-6484254 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 0.909 | 0.415 | 1.123 | 0.543 | 1.754 | 3.063 | 0.0 | 0.507 | 0.264 | 0.395 | 0.575 | 0.452 | 4.009 | 0.532 | 0.931 | 0.267 | 0.543 | 0.251 | 0.575 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7648
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.115
|
— | — |
0.046
|
0.056
|
0.005
|
0.130
|
0.387
|
0.253
|
0.345
|
0.003
|
0.665
|
0.274
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002100
|
2.000
|
2.000
|
Hsc_gene_24338.t1;Hsc_gene_24339.t1
|
Hsc_gene_24338.t1;Hsc_gene_24339.t1;Hsc_gene_25248.t2;Hsc_gene_6621.t1
|
F23H12.4b
|
Q21184.3 Putative cuticle collagen 155 [Caenorhabditis elegans]
|
KAH7725483.1 Nematode cuticle collagen [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.936|GO:0032501_0.861|GO:0032502_0.860|GO:0048856_0.860|GO:0007275_0.831|GO:0005575_0.736|GO:0110165_0.732|GO:0040002_0.670|GO:0042335_0.670|GO:0030312_0.655|GO:0071944_0.655|GO:0031012_0.581|GO:0062023_0.581|GO:0042303_0.531|GO:0018996_0.517|GO:0042338_0.517
|
IPR002486+12-64_15-64+|IPR008160+225-280+|IPR050632+18-290+
|
SM01088+12-64+
|
PF01391+225-280+Collagen_triple_helix_repeat_(20_copies)|PF01484+15-64+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+18-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
54-307
|
1.000
|
1-53
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
29012.870
|
5.237
|
-1.000
|
10.749
|
3.909
|
29.642
|
70.358
|
5.212
|
5.537
|
75.570
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
10081.983
|
2869.447
|
121.216
|
91.231
|
1959.334
|
72128.402
|
53.383
|
37515.301
|
102.230
|
1005.133
|
618.175
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.795
|
-5.111
|
-0.301
|
4.391
|
5.218
|
-10.383
|
-1.062
|
-9.300
|
-3.394
|
— | — | — | — |
No JSON data available for plots.