Hg_chrom4_TN10mRNA_8136
Organism: Heterodera glycines Gene Locus: chr4:6486490-6487498 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 0.909 | 0.415 | 1.123 | 0.543 | 1.754 | 3.025 | 0.0 | 0.507 | 0.352 | 0.444 | 0.575 | 0.452 | 3.946 | 0.598 | 0.838 | 0.32 | 0.494 | 0.251 | 0.575 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7649
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.029
|
— | — |
0.039
|
0.059
|
0.006
|
0.128
|
0.379
|
0.246
|
0.335
|
0.003
|
0.671
|
0.272
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002100
|
2.000
|
2.000
|
Hsc_gene_24338.t1;Hsc_gene_24339.t1
|
Hsc_gene_24338.t1;Hsc_gene_24339.t1;Hsc_gene_25248.t1;Hsc_gene_25248.t2;Hsc_gene_6621.t1
|
F23H12.4b
|
P34687.2 Cuticle collagen 34 [Caenorhabditis elegans]
|
AAC47437.1 COL-1 [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.937|GO:0032501_0.865|GO:0032502_0.862|GO:0048856_0.862|GO:0007275_0.835|GO:0005575_0.734|GO:0110165_0.730|GO:0040002_0.670|GO:0042335_0.670|GO:0030312_0.644|GO:0071944_0.644|GO:0031012_0.579|GO:0062023_0.579|GO:0042303_0.528|GO:0018996_0.514|GO:0042338_0.514
|
IPR002486+12-64_15-64+|IPR008160+158-215_225-280+|IPR050632+18-290+
|
SM01088+12-64+
|
PF01391+158-215_225-280+Collagen_triple_helix_repeat_(20_copies)|PF01484+15-64+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+18-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
66-307
|
1.000
|
1-65
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
29197.200
|
7.309
|
1.000
|
11.401
|
3.909
|
29.967
|
70.033
|
5.863
|
5.537
|
74.267
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
5731.474
|
730.135
|
7.649
|
9.546
|
9447.830
|
40697.162
|
39.345
|
7255.575
|
9.675
|
3247.725
|
1859.989
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-6.803
|
-6.393
|
— |
9.918
|
2.123
|
-10.006
|
-2.607
|
-7.380
|
-8.554
|
— |
1.829
|
— | — |
No JSON data available for plots.