SCN Proteipedia

Hg_chrom4_TN10mRNA_8138

Organism: Heterodera glycines Gene Locus: chr4:6501967-6505626 Feature type: polypeptide

Protein Sequence

Length: 632

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.178	2.061	0.403	0.818	0.659	1.704	1.149	1.661	0.774	1.005	0.36	1.489	0.791	1.278	0.936	1.673	0.934	0.719	0.365	0.093	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7651	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.764

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	40-87	0.823	50-90	0.993	—	—	0.000	—	—	0.873	0.127	0.007	0.351	0.059	0.054	0.041	0.043	0.066	0.079

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008752	1.000	1.000	Hsc_gene_24334.t1	Hsc_gene_24334.t1	—	Q6NZT6.1 Interferon regulatory factor 2-binding protein 2-A [Danio rerio]	KAH7729960.1 Interferon regulatory factor 2-binding protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.955\|GO:0005575_0.796\|GO:0110165_0.788\|GO:0009987_0.780\|GO:0032502_0.710\|GO:0005622_0.698\|GO:0065007_0.659\|GO:0050789_0.649\|GO:0050794_0.644\|GO:0043226_0.642\|GO:0003674_0.638\|GO:0043229_0.636\|GO:0048856_0.609\|GO:0032501_0.598\|GO:0016020_0.591\|GO:0008152_0.569\|GO:0019222_0.569\|GO:0031323_0.569\|GO:0044237_0.569\|GO:0043170_0.560\|GO:0044238_0.554\|GO:0060255_0.554\|GO:0080090_0.554\|GO:0009058_0.546\|GO:0009059_0.541\|GO:0009889_0.541\|GO:0010467_0.541\|GO:0010468_0.541\|GO:0010556_0.541\|GO:0031326_0.541\|GO:0044249_0.541\|GO:0048519_0.538\|GO:0006139_0.528\|GO:0016070_0.527\|GO:0019219_0.527\|GO:0051252_0.527\|GO:0090304_0.527\|GO:0034654_0.523\|GO:0032774_0.519\|GO:0048523_0.519\|GO:0141187_0.519\|GO:0005488_0.518\|GO:0043227_0.517\|GO:0006351_0.511\|GO:0006355_0.511\|GO:2001141_0.511\|GO:0043231_0.505	IPR022750+90-139+\|IPR044882+473-531+	—	PF11261+90-139+Interferon_regulatory_factor_2-binding_protein_zinc_finger	G3DSA:1.10.10.1580:FF:000001+473-531+interferon_regulatory_factor_2-binding_protein_2	PTHR10816+190-532+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-58;190-468;542-632	2.000	59-189;469-541	8yth_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.978	66114.450	8.145	15.500	16.456	6.962	49.367	50.633	10.285	6.171	62.025

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	turquoise	894.428	928.108	608.807	968.099	1286.856	1547.306	633.072	1863.294	141.416	868.735	557.027

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.837	—	0.777	0.378	—	-1.280	—	-1.414	—	—	—	—	—

No JSON data available for plots.

Back to Browser