Hg_chrom4_TN10mRNA_8141
Organism: Heterodera glycines Gene Locus: chr4:6510164-6512538 Feature type: polypeptideProtein Sequence
Length: 273
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.639 | 1.619 | 1.066 | 0.884 | 0.611 | 1.409 | 0.567 | 1.832 | 2.035 | 1.683 | 0.444 | 0.431 | 1.425 | 0.775 | 1.346 | 0.89 | 0.6 | 0.888 | 0.845 | 1.077 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7653
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.921
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKFIASIHQNSHRRRLRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.429
|
0.385
|
0.004
|
0.607
|
0.179
|
0.181
|
0.127
|
0.156
|
0.139
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008753
|
1.000
|
1.000
|
Hsc_gene_24332.t2
|
Hsc_gene_24332.t1;Hsc_gene_24332.t2
|
— | — |
KAK5976775.1 VHL domain-containing protein [Trichostrongylus colubriformis]
|
PWC41430
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0009987_0.876|GO:0005575_0.865|GO:0110165_0.862|GO:0065007_0.830|GO:0008152_0.818|GO:0050789_0.807|GO:0005622_0.801|GO:0050896_0.793|GO:0050794_0.791|GO:0044238_0.789|GO:0043170_0.767|GO:0051716_0.764|GO:0005737_0.758|GO:0032501_0.755|GO:0032502_0.746|GO:0048856_0.746|GO:0051179_0.734|GO:0071840_0.729|GO:0019538_0.727|GO:0006950_0.726|GO:0048519_0.725|GO:0016043_0.724|GO:0007275_0.722|GO:0006810_0.721|GO:0051234_0.721|GO:0042221_0.720|GO:0048523_0.713|GO:0048731_0.712|GO:0048583_0.704|GO:0043412_0.701|GO:0051641_0.701|GO:0065008_0.701|GO:0036211_0.700|GO:0006996_0.697|GO:0009628_0.695|GO:0070887_0.695|GO:0071705_0.694|GO:0033554_0.693|GO:0048513_0.693|GO:0009653_0.690|GO:0051649_0.690|GO:0033036_0.688|GO:0044085_0.688|GO:0070727_0.688|GO:0009888_0.687|GO:0008104_0.686|GO:0051128_0.686|GO:0045184_0.685|GO:0022607_0.683|GO:0046907_0.683|GO:0080134_0.683|GO:0007049_0.682|GO:0015031_0.682|GO:0048870_0.682|GO:0000280_0.681|GO:0022402_0.681|GO:0048285_0.681|GO:0048646_0.681|GO:0016567_0.679|GO:0032446_0.679|GO:0043687_0.679|GO:0070647_0.679|GO:0006886_0.678|GO:0016477_0.678|GO:0035295_0.678|GO:0043933_0.678|GO:0060429_0.678|GO:0007010_0.677|GO:0000278_0.676|GO:0007017_0.676|GO:0033043_0.676|GO:0035239_0.676|GO:0140014_0.676|GO:1903047_0.676|GO:0002009_0.675|GO:0048729_0.675|GO:0070482_0.675|GO:0070925_0.675|GO:0000226_0.674|GO:0001666_0.674|GO:0007163_0.674|GO:0036293_0.674|GO:0051129_0.674|GO:0051276_0.674|GO:0000070_0.670|GO:0000819_0.670|GO:0001667_0.670|GO:0006611_0.670|GO:0006913_0.670|GO:0007019_0.670|GO:0007026_0.670|GO:0007051_0.670|GO:0007052_0.670|GO:0007059_0.670|GO:0007098_0.670|GO:0007424_0.670|GO:0007427_0.670|GO:0010631_0.670|GO:0010639_0.670|GO:0016333_0.670|GO:0016334_0.670|GO:0022411_0.670|GO:0031023_0.670|GO:0031109_0.670|GO:0031110_0.670|GO:0031111_0.670|GO:0031114_0.670|GO:0032886_0.670|GO:0032984_0.670|GO:0035148_0.670|GO:0035149_0.670|GO:0035152_0.670|GO:0036294_0.670|GO:0043242_0.670|GO:0043244_0.670|GO:0051168_0.670|GO:0051169_0.670|GO:0051225_0.670|GO:0051261_0.670|GO:0051493_0.670|GO:0051494_0.670|GO:0060438_0.670|GO:0060541_0.670|GO:0070507_0.670|GO:0071453_0.670|GO:0071456_0.670|GO:0080135_0.670|GO:0090130_0.670|GO:0090132_0.670|GO:0090307_0.670|GO:0097435_0.670|GO:0098813_0.670|GO:0140694_0.670|GO:1900037_0.670|GO:1901879_0.670|GO:1901880_0.670|GO:1902850_0.670|GO:1902903_0.670|GO:1902904_0.670|GO:0032991_0.617|GO:1902494_0.566|GO:0140535_0.554|GO:1990234_0.552|GO:0000151_0.540|GO:0000153_0.540|GO:0030891_0.540
|
IPR024053+94-161+|IPR036208+91-153+|IPR037140+89-173+
|
— |
PF01847+94-161+VHL_beta_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-273
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
31313.980
|
7.437
|
5.000
|
22.711
|
13.553
|
45.055
|
54.945
|
13.187
|
9.524
|
45.421
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
510.965
|
433.302
|
537.109
|
446.404
|
504.184
|
561.189
|
585.652
|
589.545
|
156.454
|
746.611
|
493.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.159
|
0.144
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.