SCN Proteipedia

Hg_chrom4_TN10mRNA_8146

Organism: Heterodera glycines Gene Locus: chr4:6529095-6531318 Feature type: polypeptide

Protein Sequence

Length: 462

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.78	0.755	0.669	0.746	0.938	1.166	0.722	1.082	0.818	1.199	0.656	1.91	0.782	1.457	1.369	2.505	0.887	0.492	0.333	0.573	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7658	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	68-89	0.977	—	—	0.000	—	—	0.771	0.137	0.007	0.458	0.053	0.059	0.078	0.031	0.053	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003873	1.000	2.000	Hsc_gene_24328.t1;Hsc_gene_24328.t2	Hsc_gene_24328.t1;Hsc_gene_24328.t2	—	Q0IH87.2 Paired box protein Pax-3-B [Xenopus laevis]	KAI6190832.1 Paired box protein Pax-2-B [Aphelenchoides bicaudatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0006355	GO:0008150_0.953\|GO:0009987_0.875\|GO:0005575_0.863\|GO:0110165_0.859\|GO:0005622_0.812\|GO:0065007_0.782\|GO:0043226_0.776\|GO:0043229_0.776\|GO:0050789_0.746\|GO:0032502_0.736\|GO:0048856_0.736\|GO:0050794_0.735\|GO:0008152_0.714\|GO:0043170_0.714\|GO:0009058_0.709\|GO:0009059_0.709\|GO:0010467_0.709\|GO:0044237_0.709\|GO:0044249_0.709\|GO:0003674_0.707\|GO:0005488_0.705\|GO:0032501_0.704\|GO:0016020_0.701\|GO:0006139_0.698\|GO:0034654_0.698\|GO:0044238_0.698\|GO:0090304_0.698\|GO:0141187_0.698\|GO:0016070_0.697\|GO:0032774_0.697\|GO:0019222_0.674\|GO:0031323_0.674\|GO:0006351_0.662\|GO:0080090_0.658\|GO:0060255_0.654\|GO:0003676_0.646\|GO:0097159_0.646\|GO:0009889_0.643\|GO:0010468_0.643\|GO:0010556_0.643\|GO:0031326_0.643\|GO:0007275_0.634\|GO:0043227_0.633\|GO:0005634_0.627\|GO:0043231_0.627\|GO:0019219_0.623\|GO:0051252_0.623\|GO:0048518_0.622\|GO:0048731_0.620\|GO:2001141_0.614\|GO:0048522_0.611\|GO:0006355_0.603\|GO:0003677_0.593\|GO:0043565_0.587\|GO:0009893_0.586\|GO:0010604_0.580\|GO:0031325_0.579\|GO:0006366_0.574\|GO:0009891_0.573\|GO:0048513_0.573\|GO:0031328_0.567\|GO:0010557_0.560\|GO:0003690_0.559\|GO:1990837_0.556\|GO:0009653_0.555\|GO:0045935_0.553\|GO:0051254_0.553\|GO:0048869_0.547\|GO:0030154_0.546\|GO:0045893_0.540\|GO:1902680_0.540\|GO:0006357_0.520\|GO:0000976_0.502\|GO:0001067_0.502	IPR001523+290-411_290-413_292-411_294-309_312-330_332-349+\|IPR009057+293-411+\|IPR036388+285-357_361-413+\|IPR043565+289-437+	SM00351+290-411+	PF00292+292-411+'Paired_box'_domain	—	PTHR45636+289-437+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-38;185-307;405-462	2.000	39-184;308-404	2k27_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.976	50095.290	8.771	13.000	22.511	7.359	53.247	46.753	13.203	9.307	55.628

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	purple	686.275	169.536	324.053	895.685	1623.434	2486.738	1015.577	352.082	22.788	410.197	244.164

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.704	2.265	1.576	0.826	0.630	-1.282	-2.929	1.672	-4.309	5.486	—	—	—

No JSON data available for plots.

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